|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | |
|
|
|
|
. | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  | . | . | . | . | . |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
Query Sequence |   |
M | A | V | L | G | L | Q | G | V | R | G | G | V | G | T | T | T | I | T | A | A | L | A | W | S | L | Q | M | L | . |
G | E | N | V | L | V | V | D | A | C | P | D | N | L | L | R | L | S | F | N | V | D | F | T | H | R | Q | G | W | A | R | A | M | L | D | G | Q | D | W | R | D | A | . |
. |
. |
. |
. |
G | L | R |
Query Conservation |   |
|
|
|
|
|
|   |
|   |
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |   |
|
|   |   | . |
|   |   |
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
Template Conservation |   |
  |
|
|
|   |
|   |   |   |
|
|
|
|
|
|
|
|   |
|   |   |
|
|   |   |
|
|   |   |   |
|   |   |
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
K | R | V | F | G | F | V | S | A | K | G | G | D | G | G | S | C | I | A | A | N | F | A | F | A | L | S | Q | E | P | D | I | H | V | L | A | V | D | I | S | L | P | F | G | D | L | D | X | Y | L | S | G | N | T | H | S | Q | D | L | A | D | I | S | N | A | S | D | R | L | D | K | S | L | L | D | T | X | V | Q | H |
Template Known Secondary structure |   |
S |  |  |  |  |  |  |  | S | S | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | T | T |
|
|  |  |  |  |  |
|
| T | T | T |
|
| G | G | G | G | T |
| S | S |
|
| S |
|
|  |  |  |  |  |  | G | G | G | G |
|
|  |  |  |  |  |  |  | S |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | T | S | Q | L | D | L | L | P | F | G | Q | L | S | I | E | E | Q | E | N | P | Q | H | W | Q | T | R | L | S | D | I | C | S | G | L | Q | Q | L | K | A | S | G | R | Y | Q | W | I | L | I | D | L | P | R | D | A | S | Q | I | T | H | Q | L | L | S | L | C | D | H | S | L | A | I | V | N | V | D | A | N | C | H |
Query Conservation |   |
  |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |
|   |
Template Sequence |   |
I | S | P | S | L | D | L | I | P | S | P | A | T | F | E | K | I | V | N | I | E | . |
. |
. |
. |
. |
. |
. |
. |
P | E | R | V | S | D | L | I | H | I | A | A | S | F | Y | D | Y | I | I | V | D | F | G | A | S | I | D | H | V | G | V | W | V | L | E | H | L | D | E | L | C | I | V | T | T | P | S | L | Q | S | L |
Template Known Secondary structure |   |
 |  | T | T |  |  |  |  |
|
|
| S | S |  |  |  |  |  | T |
|
| . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |
|
| S | S |
|
| T | T |  |  |  |  | G | G | G |
| S |  |  |  |  |  |  |
| S | S |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . |
  |
  |   |
155 | . | . | . | . | |
|
|
|
|
|
|
|
160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | |
. | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  | . |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | R | L | H | Q | . |
. |
. |
. |
. |
. |
. |
. |
Q | A | L | P | D | G | A | H | I | L | I | N | D | F | R | I | G | S | Q | V | Q | D | D | I | Y | Q | L | W | L | Q | S | Q | R | R | L | L | P | M | L | I | H | R | D | E | A | M | . |
A | E | C | L | A | A | K | Q | P | V | G | E | Y | R | S | D | A | L | A | A |
Query Conservation |   |
  |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   | . |   |   |
|   |   |   |
|   |
|
|   |   |   |   |
|   |
|   |   |
|
Alig confidence |   |
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |
|   |
|   |   |
|
Template Sequence |   |
R | R | A | G | Q | L | L | K | L | C | K | E | F | E | K | P | I | S | R | I | E | I | I | L | N | R | A | D | T | S | R | I | T | . |
. |
. |
. |
S | D | E | I | E | K | V | I | G | R | P | I | S | K | R | I | P | Q | D | E | D | A | X | Q | E | S | L | L | S | G | Q | S | V | L | K | V | A | P | K | S | Q | L | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T |
| S | S |
|
| S |
|  |  |  |  |  | T | T | T | T |
|
|
|
|
| . | . | . | . |  |  |  |  |  |  |  |  | T | S |
|
|
|  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  | T | S |
|  |  |  |  |
| T | T | S |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
153 | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | |
|
|
|
. | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . |
  |
  |   |
226 | . | . | . | 230 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | E | I | L | T | L | A | N | W | C |
Query Conservation |   |
  |   |   |   |   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|   |   |
|
Template Sequence |   |
K | T | I | V | D | W | A | L | H | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
  |   |
230 | . | . | . | . | . | . | . | . | . |
  |