Job Description P37655 Confidence 98.97% Date Thu Jan 5 11:56:28 GMT 2012 Rank 49 Aligned Residues 162 % Identity 14% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	L	G	L	Q	G	V	R	G	G	V	G	T	T	T	I	T	A	A	L	A	W	S	L	Q	M	L	G	E	N	V	L	V	V	D	A	C	P	D	N	L	L	R	L	S	F	N	V	D	F	T	H	R	Q	G	W	A	R	A	M	L	D	G	Q	D	W	R	D	A	G	L	R	Y	T	S	Q	L	D	L
Query Conservation
Alig confidence											.																																			.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																																			.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	I	L	L	V	G	I	Q	.	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	.	.	.	.	.	.	Y	E	Q	L	K	Q	L	A	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	H	V	P	I
Template Known Secondary structure										S	.	S	S	S	T	T																							S				T	T	G	.	.	.	.	.	.	G	G	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure											.																																			.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.							.	.	.	.	.	.	150	.	.	.																.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.													.	.	.	.	.	.											.	.	.	.
Query SS confidence																																																.	.													.	.	.	.	.	.											.	.	.	.
Query Sequence		L	P	F	G	Q	L	S	I	E	E	Q	E	N	P	Q	H	W	Q	T	R	L	S	D	I	C	S	G	L	Q	Q	L	K	A	S	G	R	Y	Q	W	I	L	I	D	L	P	R	.	.	D	A	S	Q	I	T	H	Q	L	L	S	L	.	.	.	.	.	.	C	D	H	S	L	A	I	V	N	V	.	.	.	.
Query Conservation																																																.	.													.	.	.	.	.	.											.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.												.	.													.	.	.	.	.	.											.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q
Template Known Secondary structure					S	S	S			S	S	S	T	T							T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S									S		S	S											T	T	S	S	S			S								G	G	G	G	G
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180														.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	N	C	H	I	R	L	H	Q	Q	A	L	P	D	G	A	H	I	L	I	N	D	F	R	I	G	S	Q	V	Q	D	D	I	Y	Q	L	W	L	Q	S	Q	R	R	L	L	P	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	G	I	Q	A	K	A	F	K	E	A	V	G	E	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G	G	G	A	L	S	A	V	A	E	T	K	A	P	I	K	F	I	G	I
Template Known Secondary structure		G										T	T	S		S									S	S	S		S	T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions