Job Description P37655 Confidence 98.67% Date Thu Jan 5 11:56:28 GMT 2012 Rank 52 Aligned Residues 106 % Identity 26% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.									.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																														.																		.	.	.	.	.	.	.	.
Query SS confidence																														.																		.	.	.	.	.	.	.	.
Query Sequence		A	V	L	G	L	Q	G	V	R	G	G	V	G	T	T	T	I	T	A	A	L	A	W	S	L	Q	M	L	.	G	E	N	V	L	V	V	D	A	C	P	D	N	L	L	R	L	.	.	.	.	.	.	.	.	S	F	N	V	D	F	T	H	R	Q	G	W	A	R	A	M	L	D	G	Q	D	W	R	D	A	G
Query Conservation																														.																		.	.	.	.	.	.	.	.
Alig confidence											.																			.																		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																																																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	V	L	M	A	G	L	Q	.	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S	S	.	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	T							S	S				T	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.																																																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.										140	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.
Query Sequence		L	R	Y	T	S	Q	L	D	L	L	P	F	G	Q	L	S	I	E	E	Q	E	N	P	Q	H	W	Q	T	R	L	S	D	I	C	S	G	L	Q	Q	L	K	A	S	G	R	Y	Q	W	I	L	I	D	L	P	R	D	A	S	Q	I	T	H	Q	L	L	S	L	.	.	.	.	.	.	.	.	.	C	D	H	S
Query Conservation																																																																					.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.													.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	.	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T													T	T		S								.				S	S																		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
																																169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		144	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	I	V	N	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	V	V	D	A	M
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions