Job Description P37655 Confidence 99.07% Date Thu Jan 5 11:56:28 GMT 2012 Rank 47 Aligned Residues 163 % Identity 17% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	L	G	L	Q	G	V	R	G	G	V	G	T	T	T	I	T	A	A	L	A	W	S	L	Q	M	L	G	E	N	V	L	V	V	D	A	C	P	D	N	L	L	R	L	S	F	N	V	D	F	T	H	R	Q	G	W	A	R	A	M	L	D	G	Q	D	W	R	D	A	G	L	R	Y	T	S	Q	L	D	L
Query Conservation
Alig confidence								.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	W	F	L	V	.	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E
Template Known Secondary structure								.			T	T	S	S															T	T										S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T
Template Predicted Secondary structure								.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																.	.													.	.	.	.	.	.												.	.	.
Query SS confidence																																																.	.													.	.	.	.	.	.												.	.	.
Query Sequence		L	P	F	G	Q	L	S	I	E	E	Q	E	N	P	Q	H	W	Q	T	R	L	S	D	I	C	S	G	L	Q	Q	L	K	A	S	G	R	Y	Q	W	I	L	I	D	L	P	R	.	.	D	A	S	Q	I	T	H	Q	L	L	S	L	.	.	.	.	.	.	C	D	H	S	L	A	I	V	N	V	D	.	.	.
Query Conservation																																																.	.													.	.	.	.	.	.												.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.													.	.	.	.	.	.												.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	M	D	G	E	S	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q
Template Known Secondary structure				T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.														T		S										S	S																			S								S	S	S		S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.															.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	C	H	I	R	L	H	Q	Q	A	L	P	D	G	A	H	I	L	I	N	D	F	R	I	G	S	Q	V	Q	D	D	I	Y	Q	L	W	L	Q	S	Q	R	R	L	L	P	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L	V	L	T	K	L	D	G	D	A	R	G	G	A	A	L	S	A	R	H	V	T	G	K	P	I	Y	F	A	G	V
Template Known Secondary structure														S										S	S	S		S												S							B
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions