Job Description P37655 Confidence 98.91% Date Thu Jan 5 11:56:28 GMT 2012 Rank 50 Aligned Residues 163 % Identity 14% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	L	G	L	Q	G	V	R	G	G	V	G	T	T	T	I	T	A	A	L	A	W	S	L	Q	M	L	G	E	N	V	L	V	V	D	A	C	P	D	N	L	L	R	L	S	F	N	V	D	F	T	H	R	Q	G	W	A	R	A	M	L	D	G	Q	D	W	R	D	A	G	L	R	Y	T	S	Q	L	D	L
Query Conservation
Alig confidence								.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	I	M	L	V	.	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G
Template Known Secondary structure								.		S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S											T	T
Template Predicted Secondary structure								.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.											.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.															.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.															.
Query Sequence		L	P	F	G	Q	L	S	I	E	E	Q	E	N	P	Q	H	W	Q	T	R	L	S	D	I	C	S	G	L	Q	Q	L	K	A	S	G	R	Y	Q	W	I	L	I	D	L	P	R	D	A	S	Q	I	T	H	Q	L	.	.	.	.	.	.	.	.	.	.	L	S	L	C	D	H	S	L	A	I	V	N	V	D	.
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.															.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.															.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	P	N	N	Q	N	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I
Template Known Secondary structure			S	S				T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T		S									S			S	S	T																		S								T	T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.															.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
				151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	A	N	C	H	I	R	L	H	Q	Q	A	L	P	D	G	A	H	I	L	I	N	D	F	R	I	G	S	Q	V	Q	D	D	I	Y	Q	L	W	L	Q	S	Q	R	R	L	L	P	M	L
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		G	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I	G	S	V	I	I	T	K	M	D	G	T	A	K	G	G	G	A	L	S	A	V	V	A	T	G	A	T	I	K	F	I	G	T
Template Known Secondary structure		G	G	G	G									T	T		S	S								S	S	S		S			T								T	T	T			B
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions