Job Description P0AEW6 Confidence 100.00% Date Thu Jan 5 11:24:28 GMT 2012 Rank 30 Aligned Residues 292 % Identity 18% Template c3kd6B_ PDB info PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp Resolution 1.88 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	V	G	I	D	Q	T	L	V	D	I	E	A	K	V	D	D	E	F	I	E	R	Y	G	L	S	A	G	H	S	L	V	I	E	D	D	V	A	E	A	L	Y	Q	E	L	K	Q	K	N	L	I	T	H	Q	F	A	G	G	T	I	G	N	T	M	H	N	Y	S	V	L	A	D	D	R	S	V	L	L	G
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	L	V	I	G	S	L	A	F	D	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	P	F	G	R	S	D	N	T	L	G	G	S	S	T	Y	I	A	L	S	A	S	Y	F	T	D	E	P	I	R	X	V	G
Template Known Secondary structure							S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S																			T	T	T		S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.																																		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	C	S	N	I	E	I	G	S	Y	A	Y	R	Y	L	C	N	T	S	S	R	T	D	L	N	Y	L	Q	G	V	D	G	P	I	G	R	C	F	T	L	I	G	E	S	G	E	R	T	F	A	I	S	P	G	H	M	N	Q	L	R	A	E	S	I	P	E	D	V	I	A	G	A	S	A	L	V	L	T	S
Query Conservation
Alig confidence			.					.																		.																																																						.	.
Template Conservation			.					.																		.																																																						.	.
Template Sequence		V	.	V	G	S	D	.	F	G	K	E	H	F	D	L	L	H	A	K	N	I	D	T	R	.	G	I	Q	V	I	E	D	G	K	T	F	R	W	A	G	R	Y	H	Y	D	X	N	T	R	D	T	L	D	T	Q	L	N	V	F	A	E	F	D	P	H	V	P	Q	Y	Y	R	D	S	K	F	V	C	L	.	.
Template Known Secondary structure			.			T	T	.	S											T	T					.						T	T												T	T	S	S										G	G	G	T	T							G	G	G	T	T		S					.	.
Template Predicted Secondary structure			.					.																		.																																																						.	.
Template SS confidence
		49		50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	V	R	C	K	P	G	E	P	M	P	E	A	T	M	K	A	I	E	Y	A	K	K	Y	N	V	P	V	V	L	T	L	G	T	K	F	V	I	A	E	N	P	Q	W	W	Q	Q	F	L	K	D	H	V	S	I	L	A	M	N	E	D	E	A	E	A	L	T	G	E	S	D	P	L	L	A	S	D	K	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.																											.	.																.
Template Conservation		.	.	.	.	.	.	.																											.	.																.
Template Sequence		.	.	.	.	.	.	.	G	N	I	D	P	E	L	Q	L	K	V	L	D	Q	I	D	D	P	K	L	V	V	C	D	T	X	.	.	N	F	W	I	E	G	K	P	E	E	L	K	K	V	L	.	A	R	V	D	V	F	I	V	N	D	S	E	A	R	L	L	S	G	D	P	N	L	V	K	T	A	R	I	I
Template Known Secondary structure		.	.	.	.	.	.	.		S	S										T	T		S	S		S								.	.																.	T	T		S														S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.																											.	.																.
Template SS confidence
									124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		275	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		L	D	W	.	V	D	L	V	L	C	T	A	G	P	I	G	L	Y	M	A	G	F	T	E	D	E	A	K	R	K	T	Q	H	P	L	L	P	G	A	I	A	E	F	N	Q	Y	E	F	S	R	A	M	R	H	K	D	C	Q	N	P	L	R	V	Y	S	H	I	A	P	Y	M	G	G	P	E	K	I	M	N	T
Query Conservation					.
Alig confidence					.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	E	X	G	P	K	T	L	I	I	K	K	G	E	H	G	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	D	N	G	I	F	A	A	P	A	F	P	L	E	S	I	Y	D	P
Template Known Secondary structure			T	T	S		S							T	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T									T	T				S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.																																										.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	A	G	D	G	A	L	A	A	L	L	H	D	I	T	A	N	S	Y	H	R	S	N	V	P	N	S	S	K	H	K	F	T	W	L	T	Y	S	S	L	A	Q	V	C	K	Y	A	N	R	V	S	Y	Q	V	L	N	Q	H	S	P	R	L	T	R	G	L	P	E	R	E	D	S	L	E	E	S	Y	W
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Sequence		T	G	A	G	D	T	F	A	G	G	F	I	G	H	L	A	R	C	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	E	A	E	X	R	K	A	V	L	Y	G	S	A	X	A	S	F	C	V	E	Q	F	G	P	Y	.	.	R	Y	N	D	L	D	L	L	E	V	D	D	R	Y	Q
Template Known Secondary structure		T	T																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S																			T	T	S	S	T	T	G	.	.	G	G	G	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.																.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions