Job Description P0AEW6 Confidence 100.00% Date Thu Jan 5 11:24:28 GMT 2012 Rank 40 Aligned Residues 274 % Identity 16% Template c3bf5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution Resolution 1.91 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	G	I	D	Q	T	L	V	D	I	E	A	K	V	D	D	E	F	I	E	R	Y	G	L	S	A	G	H	S	L	V	I	E	D	D	V	A	E	A	L	Y	Q	E	L	K	Q	K	N	L	I	T	H	Q	F	A	G	G	T	I	G	N	T	M	H	N	Y	S	V	L	A	D	D	R	S	V	L	L	G	V
Query Conservation
Alig confidence																		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		L	A	Y	F	G	H	L	N	I	D	V	L	I	S	V	D	.	.	.	.	.	.	.	S	I	P	R	E	G	S	V	N	V	K	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	R	F	G	G	T	A	G	N	F	A	I	V	A	Q	K	F	R	I	P	F	D	L	Y	S	A	.
Template Known Secondary structure																	S	.	.	.	.	.	.	.				S	S	S					S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T									.
Template Predicted Secondary structure																		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.								20	.	.	.	.	.	.	.	.	.	30	.	.																	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	C	S	N	I	E	I	G	S	Y	A	Y	R	Y	L	C	N	T	S	S	R	T	D	L	N	Y	L	Q	G	V	D	G	P	I	G	R	C	F	T	L	I	G	E	S	G	E	R	T	F	A	I	S	P	G	H	M	N	Q	L	R	A	E	S	I	P	E	D	V	I	A	G	A	S	A	L	V	L	T	S	Y
Query Conservation
Alig confidence		.											.									.	.																																		.	.	.	.	.
Template Conservation		.											.									.	.																																		.	.	.	.	.
Template Sequence		.	V	G	X	K	T	H	R	E	Y	L	.	A	X	I	E	S	X	G	I	.	.	N	T	G	H	V	E	K	F	E	D	E	S	G	P	I	C	Y	I	A	T	D	G	K	K	Q	V	S	F	X	H	Q	G	A	.	.	.	.	.	X	A	A	W	A	P	Q	L	A	D	E	Y	E	Y	V	H	F	S	T	G
Template Known Secondary structure		.			T	T	T						.						T	T		.	.			T	T					T	T				S								S	S									T		.	.	.	.	.										S									S	S
Template Predicted Secondary structure		.											.									.	.																																		.	.	.	.	.
Template SS confidence
			60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110						.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	R	C	K	P	G	E	P	M	P	E	A	T	M	K	A	I	E	Y	A	K	K	Y	N	V	P	V	V	L	T	L	G	T	K	F	V	I	A	E	N	P	Q	W	W	Q	Q	F	L	K	D	H	V	S	I	L	A	M	N	E	D	E	A	E	A	L	T	G	E	S	D	P	L	L	A	S	D	K	A	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.																.																		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.																.																		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	Y	L	D	X	A	K	S	I	R	S	K	I	I	F	D	P	S	.	Q	E	I	H	K	Y	S	K	D	E	L	K	K	F	H	.	E	I	S	Y	X	S	I	F	N	D	H	E	Y	R	V	F	R	.	.	.	.	.	.	.	E	X	T	G	L	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S										S							G	.	G	G	G	G	G	S										.				S														.	.	.	.	.	.	.						S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.																.																		.	.	.	.	.	.	.
Template SS confidence
																131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.								.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	W	V	D	L	V	L	C	T	A	G	P	I	G	L	Y	M	A	G	F	T	E	D	E	A	K	R	K	T	Q	H	P	L	L	P	G	A	I	A	E	F	N	Q	Y	E	F	S	R	A	M	R	H	K	D	C	Q	N	P	L	R	V	Y	S	H	I	A	P	Y	M	G	G	P	E	K	I	M	N	T	N	G
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Sequence		S	P	K	V	T	T	I	V	T	N	G	E	R	G	S	S	L	F	X	D	G	K	K	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	A	I	P	S	S	.	G	D	T	V	G
Template Known Secondary structure		S		S	S							G	G	G							T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	S			T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.																																											.	.	.	.	.	.	.		220	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.			.	.	.	.	430	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		A	G	D	G	A	L	A	A	L	L	H	D	I	T	A	N	S	Y	H	R	S	N	V	P	N	S	S	K	H	K	F	T	W	L	T	Y	S	S	L	A	Q	V	C	K	Y	A	N	R	V	S	Y	Q	V	L	N	Q	H	S	P	R	L	T	R	G	L	P	E	R	E	D	.	.	S	L	E	E	S	Y
Query Conservation																																																																								.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.						.	.									.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.						.	.
Template Sequence		A	G	D	S	F	R	A	G	L	Y	L	A	L	Y	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	I	E	K	G	X	I	Y	G	T	I	I	A	H	H	V	I	.	D	D	G	I	E	.	.	N	F	S	L	N	X	E	D	L	E	R	E	T	E	N	Y
Template Known Secondary structure																T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.				S	T	.	.	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.						.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240																					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions