Job Description P0AEW6 Confidence 100.00% Date Thu Jan 5 11:24:28 GMT 2012 Rank 23 Aligned Residues 290 % Identity 15% Template c2nwhA_ PDB info PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens Resolution 1.86 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	V	V	G	I	D	Q	T	L	V	D	I	E	A	K	V	D	D	E	F	I	E	R	Y	G	L	S	A	G	H	S	L	V	I	E	D	D	V	A	E	A	L	Y	Q	E	L	K	Q	K	N	L	I	T	H	Q	F	A	G	G	T	I	G	N	T	M	H	N	Y	S	V	L	A	D	D	R	S	V	L	L
Query Conservation
Alig confidence																				.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	I	L	V	L	G	G	A	H	I	D	R	R	G	M	I	E	.	.	.	.	.	.	.	T	E	T	A	P	G	A	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	S	W	M	E	E	A	G	G	G	G	F	N	A	A	R	N	L	S	R	L	G	F	E	V	R	I	I	A
Template Known Secondary structure								S											S	.	.	.	.	.	.	.	S	S			T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.								20	.	.	.	.	.	.	.	.																	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.																	.	.	.	.
Query SS confidence																																																					.																	.	.	.	.
Query Sequence		G	V	M	C	S	N	I	E	I	G	S	Y	A	Y	R	Y	L	C	N	T	S	S	R	T	D	L	N	Y	L	Q	G	V	D	G	P	I	G	R	C	F	T	L	I	G	E	S	G	E	R	T	F	.	A	I	S	P	G	H	M	N	Q	L	R	A	E	S	I	P	.	.	.	.	E	D	V	I	A	G	A	S
Query Conservation																																																					.																	.	.	.	.
Alig confidence			.	.																				.	.																												.																	.	.	.	.
Template Conservation			.	.																				.	.
Template Sequence		P	.	.	R	G	G	D	V	T	G	E	V	V	A	E	A	A	R	Q	A	G	V	.	.	E	D	T	P	F	T	F	L	D	R	R	T	P	S	Y	T	A	I	L	E	R	D	G	N	L	V	I	A	L	A	D	M	D	L	Y	K	L	F	T	P	R	R	L	K	V	R	A	V	R	E	A	I	I	A	S	D
Template Known Secondary structure			.	.			S	S													T	T		.	.								T	T	S											T	T	S										G	G	G	G	G							T	S											S
Template Predicted Secondary structure			.	.																				.	.
Template SS confidence
		59			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	V	L	T	S	Y	L	V	R	C	K	P	G	E	P	M	P	E	A	T	M	K	A	I	E	Y	A	K	K	Y	N	V	P	V	V	L	T	L	G	T	K	F	V	I	A	E	N	P	Q	W	W	Q	Q	F	L	K	D	H	V	S	I	L	A	M	N	E	D	E	A	E	A	L	T	G	E	S	D	P	L
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.																																	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.																																	.	.	.	.	.
Template Sequence		F	L	L	C	D	A	N	L	P	E	.	.	.	.	.	.	.	.	D	T	L	T	A	L	G	L	I	A	R	A	C	E	K	P	L	A	A	I	A	I	S	P	A	K	A	V	K	L	K	A	.	.	.	.	.	A	L	G	D	I	D	I	L	F	M	N	E	A	E	A	R	A	L	T	G	V	R	D	W	P
Template Known Secondary structure							T	T	S			.	.	.	.	.	.	.	.													T	T									S					G	G	G	T	T	.	.	.	.	.	T	G	G	G		S																T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																																	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.									.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	S	D	K	A	L	D	W	V	D	L	V	L	C	T	A	G	P	I	G	L	Y	M	A	G	F	T	E	D	E	A	K	R	K	T	Q	H	P	L	L	P	G	A	I	A	E	F	N	Q	Y	E	F	S	R	A	M	R	H	K	D	C	Q	N	P	L	R	V	Y	S	H	I	A	P	Y	M	G	G	P	E
Query Conservation
Alig confidence					.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	L	.	.	R	K	A	G	L	S	G	G	V	V	T	R	G	A	S	E	V	V	A	F	N	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	A	I	L	H	P	P	L	I	R
Template Known Secondary structure					.	.			T	T									T	T	T							S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S	S
Template Predicted Secondary structure					.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.																																										.	.	.	.	.	.	.	240	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	M	N	T	N	G	A	G	D	G	A	L	A	A	L	L	H	D	I	T	A	N	S	Y	H	R	S	N	V	P	N	S	S	K	H	K	F	T	W	L	T	Y	S	S	L	A	Q	V	C	K	Y	A	N	R	V	S	Y	Q	V	L	N	Q	H	S	P	R	L	T	R	G	L	P	E	R	E	D	S	L	E
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Sequence		E	V	K	D	V	T	G	A	G	D	A	M	A	S	G	Y	L	A	A	I	A	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	I	R	E	A	L	R	Q	G	A	A	A	A	A	I	T	V	Q	S	S	F	A	T	.	.	S	Q	D	L	S	K	D	S	V	E	A
Template Known Secondary structure		S		S					S	S													T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			S	S	T	T			.	.	G	G	G
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.																					.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions