Phyre 2 alignment of P0A8N7 with d1h4vb2

Job Description P0A8N7
Confidence 100.00% Date Thu Jan 5 11:08:21 GMT 2012

Rank 27 Aligned Residues 287

% Identity 18% Template d1h4vb2

SCOP info Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Resolution 2.4

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	9	10	.	.	.	.	.	.					.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence	P	S	A	S	I	P	N	L	.	.	.	.	L	K	R	A	A	I	M	A	E	I	R	R	F	F	A	D	R	G	V	L	E	V	E	T	P	C	M	S	Q	A	T	V	T	D	I	H	L	V	P	F	E	T	R	F	V	G	P	G	H	S	Q	G	M	N	L	W	L	M	T	S	P	E	Y	H	M	K	R	L
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.																																							.	.
Template Conservation																																																			.	.
Template Sequence	V	R	G	T	K	D	L	F	G	K	E	L	R	M	H	Q	R	I	V	A	T	A	R	K	V	L	E	A	A	G	A	L	E	L	V	T	P	I	F	E	E	T	Q	V	F	E	K	G	V	G	.	.	A	K	E	M	F	T	F	Q	D	R	G	G	R	S	L	T	L	R	P	E	G	T	A	A	M	V	R	A
Template Known Secondary structure		T	T																										T	T								S				G	G	G	G				S		.	.				S						T	T	S									S
Template Predicted Secondary structure																																																			.	.
Template SS confidence
	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	85	.	.								.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.
Query Sequence	L	V	A	.	.	.	.	.	.	.	G	C	G	P	V	F	Q	L	C	R	S	F	R	N	E	E	M	G	R	Y	H	N	P	E	F	T	M	L	E	W	Y	R	P	H	Y	D	M	Y	R	L	M	N	E	V	D	D	L	L	Q	Q	V	L	D	C	P	A	A	E	S	L	S	Y	Q	Q	A	F	L	R	Y	L
Query Conservation				.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.																		.	.	.	.																																											.	.
Template Conservation																												.	.	.	.																																											.	.
Template Sequence	Y	L	E	H	G	M	K	V	W	P	Q	P	V	R	L	W	M	A	G	P	M	F	R	A	E	R	P	.	.	.	.	Y	R	Q	F	H	Q	V	N	Y	E	A	L	G	S	E	N	P	I	L	D	A	E	A	V	V	L	L	Y	E	C	L	K	E	L	G	L	R	R	L	K	V	K	.	.	L	S	S	V	G
Template Known Secondary structure				T	T	G	G	G	S	S	S	S																.	.	.	.													S																					T	T			S					.	.
Template Predicted Secondary structure																												.	.	.	.																																											.	.
Template SS confidence
	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.

	158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.						.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence	E	I	D	P	L	S	A	D	K	T	Q	L	R	E	V	A	A	K	L	D	L	S	N	V	A	D	T	E	E	D	R	D	T	L	L	Q	L	L	F	T	F	G	V	E	P	.	.	.	.	.	N	I	G	K	E	K	P	T	F	V	Y	H	F	P	A	S	Q	A	S	L	A	Q	I	S	T	E	D	H	R	V
Query Conservation																																														.	.	.	.	.
Alig confidence																																														.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.
Template Sequence	D	P	E	D	R	A	R	Y	N	A	Y	L	R	E	V	L	S	P	H	R	E	A	L	S	E	D	S	K	E	R	L	E	E	N	P	M	R	I	L	D	S	K	S	E	R	D	Q	A	L	L	K	E	L	G	V	R	P	M	L	D	F	L	G	E	E	A	R	A	H	L	K	.	.	.	.	.	.	.	E	V
Template Known Secondary structure																	G	G	G	G	G	G	S												G	G	G	G	G	G																		G	G	G	G											.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.
Template SS confidence
	168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.								.	240

	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	E	R	F	E	V	Y	Y	K	G	I	E	L	A	N	G	F	H	E	L	T	D	A	R	E	Q	Q	Q	R	F	E	Q	D	N	R	K	R	A	A	R	G	L	P	Q	H	P	I	D	Q	N	L	I	E	A	L	K	V	G	M	P	D	C	S	G	V	A	L	G	V	D	R	L	V	M	L	A	L	G	A	E
Query Conservation
Alig confidence																										.								.	.	.	.	.
Template Conservation																										.								.	.	.	.	.
Template Sequence	E	R	H	L	E	R	L	S	V	P	Y	E	L	E	P	A	L	V	R	G	L	D	Y	Y	V	.	R	T	A	F	E	V	H	.	.	.	.	.	H	S	A	L	G	G	G	G	R	Y	D	G	L	S	E	L	L	G	G	P	R	V	P	G	V	G	F	A	F	G	V	E	R	V	A	L	A	L	E	A	E	G
Template Known Secondary structure							T	T							T	T					S	T	T			.								.	.	.	.	.											T	T					T	T																							T	T
Template Predicted Secondary structure																										.								.	.	.	.	.
Template SS confidence
	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.						.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

	313	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	L	A	E	V	I	A	F	S
Query Conservation
Alig confidence	.	.	.	.	.
Template Conservation	.	.	.	.	.
Template Sequence	.	.	.	.	.	F	G	L	P
Template Known Secondary structure	.	.	.	.	.
Template Predicted Secondary structure	.	.	.	.	.
Template SS confidence
						321	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions