Job Description P0A8N7 Confidence 99.94% Date Thu Jan 5 11:08:21 GMT 2012 Rank 38 Aligned Residues 263 % Identity 14% Template c3hriF_ PDB info PDB header:ligase Chain: F: PDB Molecule:histidyl-trna synthetase; PDBTitle: histidyl-trna synthetase (apo) from trypanosoma brucei Resolution 2.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		S	E	T	A	S	W	Q	P	S	A	S	I	P	N	L	L	K	R	A	A	I	M	A	E	I	R	R	F	F	A	D	R	G	V	L	E	V	E	T	P	C	M	S	Q	A	T	V	.	T	D	I	H	L	V	P	F	E	T	R	F	V	G	P	G	H	S	Q	G	M	N	L	W	L	M	T	S	P	E	Y	H
Query Conservation																																																	.
Alig confidence														.	.	.	.																																.																		.	.	.
Template Conservation														.	.	.	.																																																		.	.	.
Template Sequence		Q	G	C	R	D	F	P	P	E	T	M	R	.	.	.	.	L	R	K	Y	L	F	D	V	F	H	S	T	A	R	K	F	G	F	E	E	Y	D	S	P	V	L	E	S	E	E	L	Y	I	R	K	A	G	E	E	I	T	E	Q	M	F	N	F	I	T	.	.	.	H	R	V	A	L	R	P	E	M	T	P	S
Template Known Secondary structure		T	T											.	.	.	.																T	T								S													G	G	G	G	G	G	S						.	.	.							S		S
Template Predicted Secondary structure														.	.	.	.																																																		.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90							.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence		M	K	R	L	L	V	A	G	C	G	.	.	.	.	.	.	P	V	F	Q	L	C	R	S	F	R	N	E	E	M	G	R	Y	H	N	P	E	F	T	M	L	E	W	Y	R	P	H	Y	D	M	Y	R	L	M	N	E	V	D	D	L	L	Q	Q	V	L	D	C	P	A	A	E	S	L	S	Y	Q	Q	A	F	L
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		L	A	R	Q	L	L	A	K	G	R	S	L	L	L	P	A	K	W	Y	S	I	P	Q	C	W	R	Y	E	A	I	T	R	G	R	R	R	E	H	Y	Q	W	N	M	D	I	I	G	V	K	S	V	S	S	E	V	E	L	V	C	A	A	C	T	A	M	Q	S	L	G	L	S	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										G	G	G	S		S	S															S	S	S	S			S											S			S	T																	T	T			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	L	E	I	D	P	L	S	A	D	K	T	Q	L	R	E	V	A	A	K	L	D	L	S	N	V	A	D	T	E	E	D	R	D	T	L	L	Q	L	L	F	T	F	G	V	E	P	N	I	G	K	E	K	P	T	F	V	Y	H	F	P	A	S	Q	A	S	L	A	Q	I	S	T	E	D	H	R	V	A	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	D	V	G	V	K	I	N	S	R	K	I	L	Q	T	V	V	E	D	K	F	A	P	V	C	.	.	.	.	.	V	I	L	K	T	I	D	E	I	A	Q	R	E	H	E	A	V	R	E	L	R	D	F	I	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T													T	T										.	.	.	.	.											T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template SS confidence
																										201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.						.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		235	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure											.	.																																																		.
Query SS confidence											.	.																																																		.
Query Sequence		R	F	E	V	Y	Y	K	G	I	.	.	E	L	A	N	G	F	H	E	L	T	D	A	R	E	Q	Q	Q	R	F	E	Q	D	N	R	K	R	A	A	R	G	L	P	Q	H	P	I	D	Q	N	L	I	E	A	L	K	V	G	M	P	.	D	C	S	G	V	A	L	G	V	D	R	L	V	M	L	A	L	G
Query Conservation											.	.																																																		.
Alig confidence											.	.															.																																			.
Template Conservation																											.
Template Sequence		Q	I	E	A	Y	G	F	G	D	W	V	I	F	D	A	S	V	V	R	G	L	A	Y	Y	T	.	G	I	V	F	E	G	F	D	R	D	G	N	F	R	A	L	C	G	G	G	R	Y	D	N	L	L	T	T	Y	G	S	P	T	A	V	P	C	V	G	F	G	F	G	D	C	V	I	V	E	L	L	N	E
Template Known Secondary structure							T		T	T	T					T	T			T	T	T	T	T			.	S								T	T	S		S			S							T	T					T	T		S	S											S	S
Template Predicted Secondary structure																											.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions