Job Description P0A8N7 Confidence 100.00% Date Thu Jan 5 11:08:21 GMT 2012 Rank 3 Aligned Residues 310 % Identity 28% Template c3bjuB_ PDB info PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase Resolution 2.31 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	S	A	S	I	P	N	L	L	K	R	A	A	I	M	A	E	I	R	R	F	F	A	D	R	G	V	L	E	V	E	T	P	C	M	S	Q	A	T	V	T	D	I	H	L	V	P	F	E	T	R	F	V	G	P	G	H	S	Q	G	M	N	L	W	L	M	T	S	P	E	Y	H	M	K	R	L	L	V	A
Query Conservation
Alig confidence																																							.																.	.	.	.
Template Conservation																																							.																.	.	.	.
Template Sequence		L	N	D	F	V	R	Q	K	F	I	I	R	S	K	I	I	T	Y	I	R	S	F	L	D	E	L	G	F	L	E	I	E	T	P	M	M	N	.	I	I	P	G	G	A	V	A	K	P	F	I	T	Y	H	.	.	.	.	N	E	L	D	M	N	L	Y	M	R	I	A	P	E	L	Y	H	K	M	L	V	V	G
Template Known Secondary structure																											T	T								S			.	S	S			S	S	S	S								.	.	.	.	T	T	T	T							S		S										T
Template Predicted Secondary structure																																							.																.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.																									.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	C	G	P	V	F	Q	L	C	R	S	F	R	N	E	E	M	G	R	Y	H	N	P	E	F	T	M	L	E	W	Y	R	P	H	Y	D	M	Y	R	L	M	N	E	V	D	D	L	L	Q	Q	V	L	D	C	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	D	R	V	Y	E	I	G	R	Q	F	R	N	E	G	I	D	L	T	H	N	P	E	F	T	T	C	E	F	Y	M	A	Y	A	D	Y	H	D	L	M	E	I	T	E	K	M	V	S	G	M	V	K	H	I	T	G	S	Y	K	V	T	Y	H	P	D	G	P	E	G	Q	A	Y	D	V	D	F	T	P	P
Template Known Secondary structure		T																	B	T	T	B		S											T																						T	S	S	S						T	T		T	T	S									S	S
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.
Query SS confidence																																			.	.	.	.	.
Query Sequence		A	E	S	L	S	Y	Q	Q	A	F	L	R	Y	L	E	I	D	P	L	S	A	D	K	T	Q	L	R	E	V	A	A	K	L	.	.	.	.	.	D	L	S	N	V	A	D	T	E	E	D	R	D	T	L	L	Q	L	L	F	T	F	G	V	E	P	N	I	G	K	E	K	P	T	F	V	Y	H	F	P	A	S
Query Conservation																																			.	.	.	.	.
Alig confidence																																			.	.	.	.	.																															.	.
Template Conservation																																																																						.	.
Template Sequence		F	R	R	I	N	M	V	E	E	L	E	K	A	L	G	M	K	L	P	E	T	N	L	F	E	T	E	E	T	R	K	I	L	D	D	I	C	V	A	K	A	V	E	C	P	P	P	R	T	T	A	R	L	L	D	K	L	V	G	E	F	L	E	V	T	C	I	N	.	.	P	T	F	I	C	D	H	P	Q	I
Template Known Secondary structure																T	S					G	G	G	T	T	S														T	T					S																T	G	G	G			S	.	.								B	G	G
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.			.	460	.	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	S	L	A	Q	I	S	T	E	D	H	R	V	A	E	R	F	E	V	Y	Y	K	G	I	E	L	A	N	G	F	H	E	L	T	D	A	R	E	Q	Q	Q	R	F	E	Q	D	N	R	K	R	A	A	R	G	L	P	Q	H	P	I	D	Q	N	L	I	E	A	L	K	V	G	M	P	D	C	S	G	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S	P	L	A	K	W	H	R	S	K	E	G	L	T	E	R	F	E	L	F	V	M	K	K	E	I	C	N	A	Y	T	E	L	N	D	P	M	R	Q	R	Q	L	F	E	E	Q	A	K	A	K	A	A	G	D	D	E	A	M	F	I	D	E	N	F	C	T	A	L	E	Y	G	L	P	P	T	A	G	W	G
Template Known Secondary structure		G		T	T	B		B		S	S	S	T	T	B	B	S							T	T									B																				T	T		T	T	S												T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	V	D	R	L	V	M	L	A	L	G	A	E	T	L	A	E	V	I	A	F	S	V	D	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	G	I	D	R	V	A	M	F	L	T	D	S	N	N	I	K	E	V	L	L	F	P	A	M	K
Template Known Secondary structure												T	T		S	S	G	G	G	G	S	S	S
Template Predicted Secondary structure
Template SS confidence
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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