Job Description P0A8N7 Confidence 99.97% Date Thu Jan 5 11:08:21 GMT 2012 Rank 33 Aligned Residues 289 % Identity 12% Template c2i4lC_ PDB info PDB header:ligase Chain: C: PDB Molecule:proline-trna ligase; PDBTitle: rhodopseudomonas palustris prolyl-trna synthetase Resolution 2.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		S	W	Q	P	S	A	S	I	P	N	L	L	K	R	A	A	I	M	A	E	I	R	R	F	F	A	D	R	G	V	L	E	V	E	T	P	C	M	S	Q	A	T	V	T	D	I	H	L	.	.	V	P	F	E	T	R	F	V	G	P	G	H	S	Q	G	M	N	L	W	L	M	T	S	P	E	Y	H	M	K	R
Query Conservation																																																		.	.
Alig confidence										.	.	.	.																																					.	.
Template Conservation										.	.	.	.
Template Sequence		A	W	L	P	L	G	H	R	.	.	.	.	V	L	K	K	I	E	Q	I	V	R	E	E	Q	N	R	A	G	A	I	E	L	L	M	P	T	L	Q	L	A	D	L	W	R	E	S	G	R	Y	D	A	Y	G	P	E	M	L	R	I	A	D	R	H	K	R	E	L	L	Y	G	P	T	N	E	E	M	I	T	E
Template Known Secondary structure										.	.	.	.																T	T								S											T					S		T	T	S						T	T								S
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		84	.	.	.	.	.	90								.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure									.	.	.	.	.	.	.													.						.	.																								.	.	.
Query SS confidence									.	.	.	.	.	.	.													.						.	.																								.	.	.
Query Sequence		L	L	V	A	G	C	G	.	.	.	.	.	.	.	P	V	F	Q	L	C	R	S	F	R	N	E	.	E	M	G	R	Y	.	.	H	N	P	E	F	T	M	L	E	W	Y	R	P	H	Y	D	M	Y	R	L	M	N	E	.	.	.	V	D	D	L	L	Q	Q	V	L	D	C	P	A	A	E	S	L	S	Y	Q
Query Conservation									.	.	.	.	.	.	.													.						.	.																								.	.	.
Alig confidence									.	.	.	.	.	.	.													.						.	.																								.	.	.
Template Conservation
Template Sequence		I	F	R	A	Y	I	K	S	Y	K	S	L	P	L	N	L	Y	H	I	Q	W	K	F	R	D	E	Q	R	P	R	F	G	V	M	R	G	R	E	F	L	M	K	D	A	Y	S	F	D	V	D	E	A	G	A	R	K	S	Y	N	K	M	F	V	A	Y	L	R	T	F	A	R	M	G	L	K	A	I	P	M	R
Template Known Secondary structure									B	G	G	G		S														S	S		B	T	G	G	G	B		S												S	S																						T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	F	L	R	Y	L	E	I	D	P	L	S	A	D	K	T	Q	L	R	E	V	A	A	K	L	D	L	S	N	V	A	D	T	E	E	D	R	D	T	L	L	Q	L	L	F	T	F	G	V	E	P	N	I	G	K	E	K	P	T	F	V	Y	H	F	P	A	S	Q	A	S	L	A	Q	I	S	T	E	D	H
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	T	G	P	I	G	G	D	L	S	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	I	V	L	A	E	T	G	E	S	G	V	Y	I	D	R	D	V	L	N	L	P	V	P	D	E	N	V	D	Y	D	G	D	L	T	P	I	I	K	Q	W	T	S	V	Y	A	A	T	E	D	V	H	E
Template Known Secondary structure						T	T			S				.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T		S							G	G	G	G	G						T	T			T	T	S										T	S	S					T	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.															.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	A	E	R	F	E	V	Y	Y	K	G	I	E	L	A	N	G	F	H	E	L	T	D	A	R	E	Q	Q	Q	R	F	E	Q	D	N	R	K	R	A	A	R	G	L	P	Q	H	P	I	D	Q	N	L	I	E	A	L	K	V	G	M	P	D	C	S	G	V	A	L	G	V	D	R	L	V	M	L	A	L	G
Query Conservation
Alig confidence																													.					.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																													.					.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		P	A	R	Y	E	S	E	V	P	E	A	N	R	L	N	T	R	G	I	E	V	G	Q	I	F	Y	F	.	G	T	K	Y	.	.	.	.	.	.	.	.	.	.	S	D	S	M	K	A	N	V	T	G	P	D	G	.	.	T	D	A	P	I	H	G	G	S	Y	G	V	G	V	S	R	L	L	G	A	I	I	E
Template Known Secondary structure									S		G	G	G																.		T			.	.	.	.	.	.	.	.	.	.				T	T						T	T	S	.	.
Template Predicted Secondary structure																													.					.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.											.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	T	L	A	E	V	I	A	F	S	V	D	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	C	H	D	D	N	G	I	I	W	P	E	A	V	A
Template Known Secondary structure			S			T	T						T	T	T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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