Job Description P0A8N7 Confidence 99.67% Date Thu Jan 5 11:08:21 GMT 2012 Rank 56 Aligned Residues 136 % Identity 13% Template c1ggmB_ PDB info PDB header:ligase Chain: B: PDB Molecule:protein (glycyl-trna synthetase); PDBTitle: glycyl-trna synthetase from thermus thermophilus complexed with2 glycyl-adenylate Resolution 3.40 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.																			.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.																			.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	W	Q	P	S	A	S	I	P	N	L	L	K	R	A	A	I	M	A	E	I	R	R	F	F	.	.	A	D	R	G	V	L	E	V	E	T	P	C	M	S	Q	A	T	V	.	.	T	D	I	H	L	V	P	F	E	T	R	F	V	G	P	G	H	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.																			.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.														.	.																			.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.
Template Sequence		D	Y	G	P	L	G	V	E	.	.	.	.	L	K	N	N	L	K	Q	A	W	W	R	R	N	V	Y	E	R	D	D	M	E	G	L	D	A	S	V	L	T	H	R	L	V	L	H	Y	S	G	H	E	A	T	F	A	D	P	M	V	D	N	A	K	A	R	Y	W	T	P	P	R	Y	F	N	M	M	F	Q	D
Template Known Secondary structure										.	.	.	.															T	S		S	S								S										T	S	T	T	G	G	G		S		B				S	S	S							B					S
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
										68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90									.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.													.	.	.																					.	.
Query SS confidence		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.													.	.	.																					.	.
Query Sequence		.	.	.	.	.	.	.	.	G	M	N	L	W	L	M	T	S	P	E	Y	H	M	K	R	L	L	V	A	G	C	G	.	.	.	.	.	.	.	.	P	V	F	Q	L	C	R	S	F	R	N	E	.	.	.	E	M	G	R	Y	H	N	P	E	F	T	M	L	E	W	Y	R	P	H	Y	.	.	D	M	Y	R
Query Conservation		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.													.	.	.																					.	.
Alig confidence		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.													.	.	.																					.	.
Template Conservation
Template Sequence		L	R	G	P	R	G	G	R	G	L	L	A	Y	L	R	P	E	T	A	Q	G	I	F	V	N	F	K	N	V	L	D	A	T	S	R	K	L	G	F	G	I	A	Q	I	G	K	A	F	R	N	E	I	T	P	R	N	F	I	F	R	V	R	E	F	E	Q	M	E	I	E	Y	F	V	R	P	G	E	D	E	Y
Template Known Secondary structure				S	S	S			G	G	G						S	S	T																			S	S														S	S		B	T	T	T	T	B		S													G	G	G
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	N	E	V	D	D	L	L	Q	Q	V	L	D	C	P	A	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	H	R	Y	W	V	E	E	R	L	K	W	W	Q	E	M	G	L	S
Template Known Secondary structure																	T	T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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