Job Description P0A8N7 Confidence 100.00% Date Thu Jan 5 11:08:21 GMT 2012 Rank 5 Aligned Residues 301 % Identity 18% Template c1asyA_ PDB info PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp Resolution 2.90 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Q	P	S	A	S	I	P	N	L	L	K	R	A	A	I	M	A	E	I	R	R	F	F	A	D	R	G	V	L	E	V	E	T	P	C	M	S	Q	A	T	V	T	D	I	H	L	V	P	F	E	T	R	F	V	G	P	G	H	S	Q	G	M	N	L	W	L	M	T	S	P	E	Y	H	M	K	R	L	L	V
Query Conservation
Alig confidence																																																.								.	.	.	.	.	.
Template Conservation																																																.								.	.	.	.	.	.
Template Sequence		L	R	T	V	T	N	Q	A	I	F	R	I	Q	A	G	V	C	E	L	F	R	E	Y	L	A	T	K	K	F	T	E	V	H	T	P	K	L	L	G	A	P	S	E	G	G	S	.	S	V	F	E	V	T	Y	.	.	.	.	.	.	F	K	G	K	A	Y	L	A	Q	S	P	Q	F	N	K	Q	Q	L	I	V
Template Known Secondary structure		T	T	S	T	T																						T	T								S			S	S		S	T	T	T	T	.	S			B			B	.	.	.	.	.	.	T	T	B						S		S
Template Predicted Secondary structure																																																.								.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.							.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																						.																		.																																								.	.
Query SS confidence																						.																		.																																								.	.
Query Sequence		A	G	C	G	P	V	F	Q	L	C	R	S	F	R	N	E	E	M	G	R	.	Y	H	N	P	E	F	T	M	L	E	W	Y	R	P	H	Y	D	.	M	Y	R	L	M	N	E	V	D	D	L	L	Q	Q	V	L	D	C	P	A	A	E	S	L	S	Y	Q	Q	A	F	L	R	Y	L	E	I	D	P	L	.	.
Query Conservation																						.																		.																																								.	.
Alig confidence																						.																		.																																								.	.
Template Conservation
Template Sequence		A	D	F	E	R	V	Y	E	I	G	P	V	F	R	A	E	N	S	N	T	H	R	H	M	T	E	F	T	G	L	D	M	E	M	A	F	E	E	H	Y	H	E	V	L	D	T	L	S	E	L	F	V	F	I	F	S	E	L	P	K	R	F	A	H	E	I	E	L	V	R	K	Q	Y	P	V	E	E	F	K	L
Template Known Secondary structure		T	T														S					S	S			S	S											S	S		T																															T	T	S
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
									163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																														.
Query SS confidence		.	.	.	.	.	.	.																																																														.
Query Sequence		.	.	.	.	.	.	.	S	A	D	K	T	Q	L	R	E	V	A	A	K	L	D	L	S	N	V	A	D	T	E	E	D	R	D	T	L	L	Q	L	L	F	T	F	G	V	E	P	N	I	G	K	E	K	P	T	F	V	Y	H	F	P	A	S	Q	A	S	L	A	.	Q	I	S	T	E	D	H	R	V	A	E
Query Conservation		.	.	.	.	.	.	.																																																														.
Alig confidence		.	.	.	.	.	.	.																		.	.																											.																.
Template Conservation																										.	.																											.
Template Sequence		P	K	D	G	K	M	V	R	L	T	Y	K	E	G	I	E	M	L	R	A	A	G	K	E	.	.	I	G	D	F	E	D	L	S	T	E	N	E	K	F	L	G	K	L	V	R	D	K	Y	D	T	D	.	F	Y	I	L	D	K	F	P	L	E	I	R	P	F	Y	T	M	P	D	P	A	N	P	K	Y	S	N
Template Known Secondary structure			S	S	S																	T	T			.	.			S	S	S																					S	.								B	T	T	S	S		T	T	B		B		S	S		T	T	B	B	S
Template Predicted Secondary structure																										.	.																											.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.			.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	E	V	Y	Y	K	G	I	E	L	A	N	G	F	H	E	L	T	D	A	R	E	Q	Q	Q	R	F	E	Q	D	N	R	K	R	A	A	R	G	L	P	Q	H	P	I	D	Q	N	L	I	E	A	L	K	V	G	M	P	D	C	S	G	V	A	L	G	V	D	R	L	V	M	L	A	L	G	A	E	T	L
Query Conservation
Alig confidence																																.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.
Template Sequence		S	Y	D	F	F	M	R	G	E	E	I	L	S	G	A	Q	R	I	H	D	H	A	L	L	Q	E	R	M	K	A	.	.	.	.	.	.	H	G	L	S	P	E	D	P	G	L	K	D	Y	C	D	G	F	S	Y	G	C	P	P	H	A	G	G	G	I	G	L	E	R	V	V	M	F	Y	L	D	L	K	N	I
Template Known Secondary structure								T	T																							.	.	.	.	.	.	T	T			T	T	S									T	T	T	T																					T		S		G
Template Predicted Secondary structure																																.	.	.	.	.	.
Template SS confidence
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.							.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
		315	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	V	I	A	F	S	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	A	S	L	F	P	R	D
Template Known Secondary structure		G	G	G	S	S	S
Template Predicted Secondary structure
Template SS confidence
		543	.	.	.	.	.	.	550	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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