Job Description P0A6U5 Confidence 52.02% Date Thu Jan 5 11:03:55 GMT 2012 Rank 437 Aligned Residues 128 % Identity 18% Template c3pvcA_ PDB info PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Resolution 2.31 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.													.	.	90	.	.	.	.	.	.															.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Query Sequence		R	F	I	D	V	G	T	G	P	G	L	P	G	I	P	L	S	I	V	R	.	.	.	.	.	.	.	.	.	.	.	.	P	E	A	H	F	T	L	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	G	K	R	V	R	F	L	R	Q	V	Q	H	E	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	F	A	E	T	G	F	G	T	G	L	N	F	L	T	L	W	R	D	F	A	L	F	R	Q	Q	S	P	N	A	T	L	R	R	L	H	Y	I	S	F	E	K	Y	P	L	H	V	A	D	L	A	S	A	H	A	R	W	P	E	L	A	S	F	A	E	Q	L	R	A	Q	W	P	L	P	L	A	G	C	H	R
Template Known Secondary structure									T	T	S																		T	T	S	S											S	S												T	T		G	G	G										T						S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
						112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																						.	.	.	.	.	.												.	.	.	.	.
Query SS confidence		.	.	.	.																						.	.	.	.	.	.												.	.	.	.	.
Query Sequence		.	.	.	.	L	K	L	E	N	I	E	P	V	Q	S	R	V	E	E	F	P	S	E	P	P	.	.	.	.	.	.	F	D	G	V	I	S	R	A	F	A	S	.	.	.	.	.	L	N	D	M	V	S	W	C	H	H	L	P	G	E	Q	G	R	F	Y	A	L	K	G	Q	M	P	E	D	E	I	A	L	L
Query Conservation		.	.	.	.																						.	.	.	.	.	.												.	.	.	.	.
Alig confidence		.	.	.	.																						.	.	.	.	.	.												.	.	.	.	.																														.
Template Conservation																																																																														.
Template Sequence		I	L	L	A	D	G	A	I	T	L	D	L	W	F	G	D	V	N	T	L	L	P	T	L	D	D	S	L	N	N	Q	V	D	A	W	F	L	D	G	F	A	P	N	P	D	X	W	N	E	Q	L	F	N	A	X	A	R	X	T	R	P	G	G	T	F	S	T	F	T	A	A	G	F	V	R	R	.	G	L	Q
Template Known Secondary structure					T	T	T	T								S						G	G	G			G	G	G	T	T									S	S					T	T		S																				S									.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	E	Y	Q	V	E	S	V	V	K	L	Q	V	P	A	L	D	G	E	R	H	L	V	V
Query Conservation
Alig confidence											.	.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence		Q	A	G	F	N	V	T	K	V	.	.	.	.	.	K	G	F	G	Q	K	R	E	X	L	T
Template Known Secondary structure			T	T							.	.	.	.	.			S	S	S	S
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230						.	.	.	.	.	.	.	.	.	240	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions