Job Description P0A6U5 Confidence 99.08% Date Thu Jan 5 11:03:55 GMT 2012 Rank 231 Aligned Residues 140 % Identity 7% Template c2cmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori Resolution 2.0 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		I	V	V	A	P	Y	L	Q	G	E	R	F	I	D	V	G	T	G	P	G	L	P	G	I	P	L	S	I	V	R	P	E	A	H	F	T	L	L	D	S	L	G	K	R	V	R	F	L	R	Q	V	Q	H	E	L	K	L	E	N	I	E	P	V	Q	S	R	V	E	E	F	.	.	P	S	E	P	P	F	D	G
Query Conservation																																																																								.	.
Alig confidence																						.	.																																																	.	.
Template Conservation																						.	.
Template Sequence		M	G	G	C	T	K	K	E	L	K	E	V	L	I	V	D	G	F	D	L	.	.	E	L	A	H	Q	L	F	K	Y	D	T	H	I	D	F	V	Q	A	D	E	K	I	L	D	S	F	I	S	F	F	P	H	F	H	E	V	K	N	N	K	N	F	T	H	A	K	Q	L	L	D	L	D	I	K	K	Y	D	L
Template Known Secondary structure					T	T	S	S									S	S				.	.							T	T	S	S								S						G	G	G	T	T	T	S	T	T						T		T	T					S	S	G	G	G	S
Template Predicted Secondary structure																						.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																			.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.
Query Sequence		V	I	S	R	A	F	A	S	L	N	D	M	V	S	W	C	H	H	L	P	G	E	Q	G	R	F	Y	A	L	K	G	Q	M	.	.	.	.	.	.	P	E	D	E	I	A	L	L	P	E	E	Y	Q	V	E	S	V	V	K	L	Q	V	P	A	L	D	G	E	R	H	L	V
Query Conservation																																			.	.	.	.	.	.
Alig confidence					.																														.	.	.	.	.	.
Template Conservation					.
Template Sequence		I	F	C	.	L	Q	E	P	D	I	H	R	I	D	G	L	K	R	M	L	K	E	D	G	V	F	I	S	V	A	K	H	P	L	L	E	H	V	S	M	Q	N	A	L	K	N	M	G	G	V	F	S	V	A	M	P	F	V	A	P	L	R	I	L	S	N	K	G	Y	I	Y
Template Known Secondary structure					.	S	S												T	T														T	T	T														T	T		S								T	T		T	T
Template Predicted Secondary structure					.
Template SS confidence
		143	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions