Job Description P06722 Confidence 2.41% Date Thu Jan 5 10:59:25 GMT 2012 Rank 86 Aligned Residues 43 % Identity 16% Template c3iydF_ PDB info PDB header:transcription/dna Chain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex Resolution 19.80 Å

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		10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		P	P	E	T	E	E	Q	L	L	A	Q	A	.	.	Q	Q	L	S	G	Y	T	L	G	E	L	A	A	L	V	G	L	V	T	P	E	N	L	K	R	D	K	G	W	I	G	V	L	L	E	I	W	L	G
Query Conservation														.	.
Alig confidence														.	.																		.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.
Template Sequence		T	A	R	E	A	K	V	L	R	M	R	F	G	I	D	M	N	T	D	H	T	L	E	E	V	G	K	Q	F	D	V	.	.	.	.	.	.	.	.	T	R	E	R	I	R	Q	I	E	A	K	A	L	R
Template Known Secondary structure														T	S	S	S					S	T	T	G	G	G	T	T	T	S	S	.	.	.	.	.	.	.	.		S	S											T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.									.	.	.	.	.	.	.	590	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions