Job Description P0A9X4 Confidence 100.00% Date Thu Jan 5 11:11:37 GMT 2012 Rank 13 Aligned Residues 324 % Identity 19% Template c3qb0C_ PDB info PDB header:structural protein Chain: C: PDB Molecule:actin-related protein 4; PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp Resolution 3.40 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		N	D	L	S	I	D	L	G	T	A	N	T	L	I	Y	V	K	G	Q	G	I	V	L	.	N	E	P	S	V	V	A	I	R	Q	D	R	A	G	S	P	K	S	V	A	A	V	G	H	D	A	K	Q	M	L	G	R	T	P	G	N	I	A	A	I	R	P	M	K	D	G	V	I	A	D	F	F	V	T	E	K
Query Conservation																									.
Alig confidence																									.												.	.													.	.	.	.
Template Conservation																																					.	.													.	.	.	.
Template Sequence		S	A	V	V	I	D	P	G	S	Y	T	T	N	I	G	Y	S	G	S	D	F	P	Q	S	I	L	P	S	V	Y	G	K	Y	T	A	.	.	D	E	G	N	K	K	I	F	S	E	Q	S	.	.	.	.	I	G	I	P	R	K	D	Y	E	L	K	P	I	I	E	N	G	L	V	I	D	W	D	T	A	Q	E
Template Known Secondary structure		S								S	S							T	T		S	S		S					S						S	S	.	.		S	S							T	T	G	.	.	.	.	G	G	S			T	T						S			T	T			S
Template Predicted Secondary structure																																					.	.													.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.					.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		M	L	Q	H	F	I	K	Q	V	H	S	N	S	F	M	R	P	S	P	R	V	L	V	C	V	P	V	G	A	T	Q	V	E	R	R	A	I	R	E	S	A	Q	.	G	A	G	A	R	E	V	F	L	I	E	E	P	M	A	A	A	I	G	A	G	L	P	V	S	E	A	T	G	S	M	V	V	D	I	G	G
Query Conservation																																												.
Alig confidence														.																														.																								.	.	.	.	.
Template Conservation														.																																																						.	.	.	.	.
Template Sequence		Q	W	Q	W	A	L	Q	N	E	L	Y	L	.	N	S	N	S	G	I	P	A	L	L	T	E	P	V	W	N	S	T	E	N	R	K	K	S	L	E	V	L	L	E	G	M	Q	F	E	A	C	Y	L	A	P	T	S	T	C	V	S	F	A	A	G	R	P	.	.	.	.	.	N	C	L	V	V	D	I	G	H
Template Known Secondary structure										T	S			.	S			T	T									T	T															T	T	S			S																T		S	.	.	.	.	.	S								S
Template Predicted Secondary structure														.																																																						.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.																													.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	T	T	E	V	A	V	I	S	L	N	G	V	V	Y	.	.	S	S	S	V	R	I	G	G	D	R	F	D	E	A	I	I	N	Y	V	R	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	S	L	I	G	E	A	T	A	E	R	I
Query Conservation																	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	T	C	S	V	S	P	I	V	D	G	M	T	L	S	K	S	T	R	R	N	F	I	A	G	K	F	I	N	H	L	I	K	K	A	L	E	P	K	E	I	I	P	L	F	A	I	K	Q	R	K	P	E	F	I	K	K	T	F	D	Y	E	V	D	K	S	L	Y	D	Y	A	N	N	R	G	F	F	Q	E	C
Template Known Secondary structure		S									T	T				G	G	G					S		S												T	T	T	S					S	T	T					S	S	S							S	S														T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		219	220	.	.	.	.	.	.	.	.	.	230						.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	H	E	I	G	S	A	Y	P	G	D	E	.	.	.	.	.	V	R	E	I	E	V	R	G	R	N	L	A	E	G	V	P	R	G	F	T	L	N	S	N	E	I	L	E	A	L	Q	E	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation														.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	T	L	C	H	I	C	P	T	K	T	L	E	E	T	K	T	E	L	S	S	T	A	K	R	S	I	E	S	P	W	N	E	E	I	V	F	D	N	E	T	R	Y	G	F	A	E	E	L	F	L	P	K	E	D	D	I	P	A	N	W	P	R	S	N	S	G	V	V	K	T	W	R	N	D	Y	V	P	L
Template Known Secondary structure					T					S	S												T									S	S	S																T	T	T	S			T	T	T	S		T	T	S				S	S							S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
										265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.								.	.	.	.	.	.	.	.	320				.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.										.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.										.	.	.
Query Sequence		.	.	.	.	.	.	.	.	T	G	I	V	S	A	V	M	V	A	L	E	Q	C	P	P	E	L	A	S	D	I	S	E	R	G	M	V	L	T	G	G	G	A	L	L	R	N	L	D	R	L	L	M	E	E	T	.	.	.	.	.	.	.	G	I	P	V	V	V	A	E	D	.	.	.	P	L	T	C	V	A
Query Conservation		.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.										.	.	.
Alig confidence		.	.	.	.	.	.	.	.																								.																								.	.	.	.	.	.	.										.	.	.
Template Conservation																																	.
Template Sequence		K	R	T	K	N	N	E	L	I	G	L	A	D	L	V	Y	S	S	I	M	S	S	D	V	D	L	R	A	T	L	A	.	H	N	V	V	L	T	G	G	T	S	S	I	P	G	L	S	D	R	L	M	T	E	L	N	K	I	L	P	S	L	K	F	R	I	L	T	T	G	H	T	I	E	R	Q	Y	Q	S	W
Template Known Secondary structure																						T	S		T	T	T						.	T	T					S	G	G	G	G	S	T	T													S	T	T	S								S		G	G	G	G	G	S
Template Predicted Secondary structure																																	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	G	G	K	A	L	E	M	I	D	M	H	G	G	D	L	F	S	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	G	S	I	L	T	S	L	G	T	F	H	Q	L	W	V	G	K	K	E
Template Known Secondary structure									T		S					T	S
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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