Job Description P0A9X4 Confidence 99.93% Date Thu Jan 5 11:11:37 GMT 2012 Rank 22 Aligned Residues 279 % Identity 23% Template c2ychA_ PDB info PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex Resolution 2.20 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																				.																		.	.	.	.	.
Query SS confidence																				.																		.	.	.	.	.
Query Sequence		M	F	S	N	D	L	S	I	D	L	G	T	A	N	T	L	I	Y	.	V	K	G	Q	G	I	V	L	N	E	P	S	V	V	A	I	R	.	.	.	.	.	Q	D	R	A	G	S	P	K	S	V	A	A	V	G	H	D	A	K	Q	M	L	G	R	T	P	G	N	I	A	A	I	R	P	M	K	D	G	V	I
Query Conservation																				.																		.	.	.	.	.
Alig confidence																				.																		.	.	.	.	.
Template Conservation
Template Sequence		P	R	V	E	A	L	G	L	E	I	G	A	S	A	L	K	L	V	E	V	S	G	N	P	P	A	L	K	A	L	A	S	R	P	T	P	P	G	L	L	X	E	G	X	V	A	E	P	A	A	L	A	Q	E	I	K	E	L	L	L	E	A	R	T	R	K	R	Y	V	V	T	A	L	S	N	L	A	V	I	L
Template Known Secondary structure													S	S									T	T	T	T												T	T	S			T	T			S																	T												G	G	G
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		82	.								.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.																		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	.	.	.	.	.	.	.	F	F	V	T	E	K	M	L	Q	H	F	I	K	Q	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	S	F	M	R	P	S	P	R	V	L	V	C	V	P	V	G	A	T	Q	V	E	R	R	A	I	R	E	S	A	Q	G	A	G	A	R	E
Query Conservation				.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		R	P	I	Q	V	P	K	X	P	L	K	E	X	E	E	A	V	R	W	E	A	E	R	Y	I	P	F	P	I	E	V	V	L	D	F	A	P	L	T	P	L	S	E	V	Q	E	G	E	Q	V	Q	V	X	V	A	A	A	R	.	.	.	.	Q	E	A	V	A	G	V	L	E	A	L	R	G	A	G	L	V	P
Template Known Secondary structure																							G	G	G		S	S											S	S		G	G	G	S		T	T	S											.	.	.	.														T	T
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		V	F	L	I	E	E	P	M	A	A	A	I	G	A	.	.	G	L	P	V	S	E	A	T	G	S	M	V	V	D	I	G	G	G	T	T	E	V	A	V	I	S	L	N	G	V	V	Y	S	S	S	V	R	I	G	G	D	R	F	D	E	A	I	I	N	Y	V	R	R	N	Y	G	S	L	I	G	E	A	T	A
Query Conservation																.	.
Alig confidence																.	.																																																				.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence		V	V	L	D	V	K	P	F	A	G	L	Y	P	L	E	A	R	L	A	E	E	P	D	R	V	F	L	V	L	D	I	G	A	E	S	T	S	L	V	L	L	R	G	D	K	P	L	A	V	R	V	L	T	L	S	G	K	D	F	T	E	A	I	A	R	S	F	.	.	.	.	.	.	N	L	D	L	L	A	A
Template Known Secondary structure											T	T	G	G	G						T	S	T	T										S	S									T	T									S		S												T	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.							.	.	.	.	.	240	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	I	K	H	E	I	G	S	A	Y	P	G	D	E	V	R	E	I	E	V	R	G	R	N	L	A	E	G	V	P	R	G	F	T	L	N	S	N	E	I	L	E	A	L	Q	E	P	L	T	G	I	V	S	A	V	M	V	A	L	E	Q	C	P	P	E	L	A	S	D	I	S	E	R	G	M	V	L	T	G
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Sequence		E	E	V	K	R	T	Y	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Y	D	A	I	R	P	V	L	V	E	L	T	Q	E	L	R	R	S	L	E	F	F	R	I	Q	L	S	.	.	.	.	P	E	V	G	Y	L	L	G
Template Known Secondary structure								T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.		S						S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250																																.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.					.	280	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.																					320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	A	L	L	R	N	L	D	R	L	L	M	E	E	T	G	I	P	V	V	V	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	L	T	C	V	A	R	G	G	G	K
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	S	K	L	R	G	L	A	S	L	L	T	D	T	L	G	V	N	L	E	P	V	N	P	W	E	A	V	A	V	D	P	K	R	F	E	S	E	Q	L	Q	E	I	G	P	E	F	A	V	A	L	G	L	A	L
Template Known Secondary structure		G	G	G	G	S	T	T										T	S							G	G	G	G	S	B			T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions