Job Description P0A9X4 Confidence 97.87% Date Thu Jan 5 11:11:37 GMT 2012 Rank 72 Aligned Residues 256 % Identity 16% Template c1z05A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Resolution 2.00 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	L	S	I	D	L	G	T	A	N	T	L	I	Y	V	K	G	Q	G	I	V	L	N	E	P	S	V	V	A	I	R	Q	D	R	A	G	S	P	K	S	V	A	A	V	G	H	D	A	K	Q	M	L	G	R	T	P	G	N	I	A	A	I	R	P	M	K	D	G	V	I	A	D	F	F	V	T	E	K	M
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	F	L	S	M	R	L	G	R	G	Y	L	T	I	A	L	H	E	L	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	L	I	D	T	K	I	D	I	H	E	I	D	Q	D	D	V	L	A	R	L
Template Known Secondary structure										T	T									T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														B
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																																						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.													.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																					.																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	H	F	I	K	Q	V	H	S	N	S	F	M	R	P	S	P	R	.	V	L	V	C	V	P	V	G	A	T	Q	V	E	R	R	A	.	.	.	.	.	.	.	.	.	.	.	.	I	R	E	S	A	Q	G	A	G	A	R	E	V	F	L	I	E	E	P	M	A	A	A	I	G	A	G	L	P	V	S	E
Query Conservation																					.																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	E	I	E	E	F	F	Q	T	Y	A	A	Q	L	D	R	V	T	S	I	A	I	T	L	P	G	L	V	N	S	E	Q	G	I	V	L	Q	M	P	H	Y	N	V	K	N	L	A	L	G	P	E	I	Y	K	A	T	G	L	P	V	F	V	A	N	D	T	R	A	W	A	L	A	E	K	L	F	G	H	S
Template Known Secondary structure												T	T	T	T												S	S				T	T	T	T						S	S	S	B		S	S	B												S																			S	T	T
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		158			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190																												.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	.	.	T	G	S	M	V	V	D	I	G	G	G	T	T	E	V	A	V	I	S	L	N	G	V	V	Y	S	S	S	V	R	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	R	F	D	E	A	I	I	N	Y	V	R	R	N	Y	G	S
Query Conservation			.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.												.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.
Template Sequence		Q	D	V	D	N	S	V	L	I	S	I	H	H	G	.	L	G	A	G	I	V	L	D	G	R	V	L	Q	G	R	H	G	N	I	G	E	L	G	H	I	Q	I	D	P	Q	G	K	R	C	H	C	G	N	Y	G	C	L	E	T	V	A	S	S	Q	A	I	R	D	Q	V	T	A	R	I	Q	A	G	E	P	S
Template Known Secondary structure		T	T		S	S							S	S	S	.								T	T					T	T	T	T		T	T	B		T	T	S	B			T	T			B		T	T	S		B	S	B	T					S														T	T
Template Predicted Secondary structure																.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	E	A	T	A	E	R	I	K	H	E	I	G	S	A	Y	P	G	D	E	V	R	E	I	E	V	R	G	R	N	L	A	E	G	V	P	R	G	F	T	L	N	S	N	E	I	L	E	A	L	Q	E	P	L	T	G	I	V	S	A	V	M	V	A	L	E	Q	C	P	P	E	L	A	S	D	I	S	E
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Template Sequence		C	L	A	T	V	E	E	I	S	I	E	D	I	C	A	A	A	A	D	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	A	V	D	V	I	Q	Q	L	G	R	Y	L	G	A	A	I	A	I	V	I	N	L	F	N	.	.	.	.	.	.	.	.	P
Template Known Secondary structure		T	T	T	T		S	S												T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.																									.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.									.
		289	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.											.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure													.													.	.	.	.	.	.	.	.	.	.
Query SS confidence													.													.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	M	V	L	T	G	G	G	A	L	.	L	R	N	L	D	R	L	L	M	E	E	T	.	.	.	.	.	.	.	.	.	.	G	I	P	V	V	V	A	E	D	P	L	T	C	V	A	R	G	G	G	K	A	L	E	M	I
Query Conservation													.													.	.	.	.	.	.	.	.	.	.
Alig confidence													.													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	I	L	I	G	G	V	I	N	Q	A	K	S	I	L	Y	P	S	I	E	Q	C	I	R	E	Q	S	L	P	V	Y	H	Q	D	L	K	L	V	E	S	R	F	Y	K	Q	A	T	M	P	G	A	A	L	I	K	Q	A	L
Template Known Secondary structure		S						S	G	G	G	G	G																S						T	T							S		S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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