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Job DescriptionP15031
Confidence98.33%DateThu Jan 5 11:34:16 GMT 2012
Rank95Aligned Residues171
% Identity12%Templatec3bh0A_
PDB info PDB header:replicationChain: A: PDB Molecule:dnab-like replicative helicase; PDBTitle: atpase domain of g40p
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70.........80.........90.........100....
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Query Sequence  LPTGKITALIGPNGCGKSTLLNCFSRLLMPQSGTVFLGDNPINMLSSRQLARRLSLLPQHHLTPEGITVQELVSYGRNPW
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Template Sequence  YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKR. . . . . . . . . . . . . . . . . LIVTAGSINAQKI
Template Known Secondary structure  B
TT


TTSSTTT
SSS
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   192.......200.........210.........220.........230.........240. ........250....
 
   105....110.........120.........130.........140.........150...... ...160.... .....170.....
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Query Sequence  LSLWGRLSAEDNARVNVAMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQN. . TPVVLLDE. . . . . . . PTTYLDINHQV
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Template Sequence  KAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQIS
Template Known Secondary structure  S

SS
TS


S

BTSSS


GGGSB
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TTS
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   255....260.........270.........280.........290.........300.........310.........320.........330....
 
   176...180....... ..190......... 200.........210..
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Query Sequence  DLMRLMGELRTQ. GKTVVAVLHDLN. . . . . . . . . . . . . . . . . . . QASRYCDQLVVMA
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Template Sequence  QISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLY
Template Known Secondary structure  T



GGGTTSSS



GGGGTTTS
S
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   335....340.........350.........360.........370.........380.........390.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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