Job Description P15031 Confidence 96.49% Date Thu Jan 5 11:34:16 GMT 2012 Rank 245 Aligned Residues 97 % Identity 23% Template c1yj5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	G	K	I	T	A	L	I	G	P	N	G	C	G	K	S	T	L	L	N	C	F	S	R	L	L	M	P	Q	S	G	T	V	F	L	G	D	N	P	I	N	M	L	S	S	R	Q	L	A	R	R	L	S	L	L	P	Q	H	H	L	T	P	E	G	I	T	V	Q	E	L	V	S	Y	G	R	N	P	W	L
Query Conservation
Alig confidence																													.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	N	P	E	V	V	V	A	V	G	F	P	G	A	G	K	S	T	F	I	Q	E	H	L	V	S	A	.	.	.	.	G	Y	V	H	V	N	R	D	T	L	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S										T	T	S	S									T	G	G	G	.	.	.	.	T											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.					.	390	.	.	.	.	.	.	.	.	.	400
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	W	G	R	L	S	A	E	D	N	A	R	V	N	V	A	M	N	Q	T	R	I	N	H	L	A	V	R	R	L	T	E	L	S	G	G	Q	R	Q	R	A	F	L	A	M	V	L	A	Q	N	T	P	V	V	L	L	D	E	P	T	T	Y	L	D	I	N	H	Q	V	D	L	M	R	L	M	G	E	L	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																		.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																		.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Q	R	C	V	S	S	C	Q	A	A	L	R	Q	G	K	R	V	V	I	D	N	.	.	T	N	P	D	V	P	S	R	A	R	Y	I	Q	C	A	K	D	.	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T							S	.	.				S														.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																		.
Template SS confidence
																																							401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.			.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.		440
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	G	K	T	V	V	A	V	L	H	D	L	N	Q	A	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	P	C	R	C	F	N	F	C	A	T	I	E	Q	A	R	H
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions