 |
Job Description | P52108 | Confidence | 36.24% | Date | Thu Jan 5 12:05:24 GMT 2012 |
Rank | 339 | Aligned Residues | 107 |
% Identity | 13% | Template | c3llvA_ |
PDB info |
PDB header:nad(p) binding protein | Chain: A: PDB Molecule:exopolyphosphatase-related protein; |
PDBTitle: the crystal structure of the nad(p)-binding domain of an2 exopolyphosphatase-related protein from archaeoglobus fulgidus to3 1.7a
|
Resolution | 1.70 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
| . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | T | I | V | F | V | E | D | D | A | E | V | G | S | L | I | A | A | Y | L | A | K | H | D | M | Q | V | T | V | E | P | . |
R | G | D | Q | A | E | E | T | I | L | R | E | N | P | D | L | V | L | L | D | I | M | L | P | G | K | D | G | M | T | I | C | R | D | L | R | A | K | W | S | G | P | I | V | L | L | T | S |
Query Conservation |   |
  |
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|   | . |   |   |   |
|
|
|   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|
|   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |
|   |
|   |   |
|
|   |
|
|   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   | . | . | . |   |   |   |
|
|
|   |
Template Sequence |   |
K | K | V | L | A | V | D | K | S | K | E | K | I | . |
. |
. |
. |
E | L | L | E | D | E | G | F | D | A | V | I | A | D | P | T | D | E | S | F | Y | R | S | L | D | L | E | G | V | S | A | V | L | I | T | G | S | D | D | E | F | N | L | K | I | L | K | A | L | R | S | V | S | . |
. |
. |
D | V | Y | A | I | V | R |
Template Known Secondary structure |   |
|
|  |  |  |  |  | S |
|  |  |  |  | . | . | . | . |  |  |  |  |  | T | T |
|  |  |  |  |
|
| T | T |
|  |  |  |  |  |  | S |
|
| T | T |
| S |  |  |  |  |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|  |  |  |  | . | . | . | . |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | |
|
|
|
. | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | |
|
|
. | . | . | . | 100 | . | . |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | D | S | D | M | N | H | I | L | A | L | E | M | G | A | C | D | Y | I | L | K | T | T | P | P | A | V | L | L | A | R | L | R | L | H | L | R | Q |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|
|
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |
|
|   | . | . | . |
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |
Template Sequence |   |
V | S | S | P | K | K | K | E | E | F | E | E | A | G | A | N | L | V | V | L | . |
. |
. |
V | A | D | A | V | K | Q | A | F | X | D | K | I | K | K |
Template Known Secondary structure |   |
 | S |
| G | G | G |  |  |  |  |  |  | T | T |
| S |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
| . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
103 | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | |
|
|
. | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|