 |
Job Description | P52108 | Confidence | 87.21% | Date | Thu Jan 5 12:05:24 GMT 2012 |
Rank | 167 | Aligned Residues | 103 |
% Identity | 14% | Template | c3ezxA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; |
PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein
|
Resolution | 2.56 Å |
|
 |
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
|
|
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | |
|
. | . | . | . | . | . | . | . | 60 | |
|
. | . | . | . | . | . | . | . | . | 70 | |
|
. | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
| . | . | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . |  |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
E | D | D | A | E | V | G | S | L | I | A | A | Y | L | A | K | H | D | M | Q | V | T | V | E | P | . |
. |
. |
R | G | D | Q | A | E | E | T | I | L | R | E | N | P | D | L | V | L | L | . |
. |
D | I | M | L | P | G | K | D | G | . |
. |
M | T | I | C | R | D | L | R | A | K | . |
. |
W | S | G | P | I | V | L | L |
Query Conservation |   |
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|   | . | . | . |   |   |   |
|
|
|   |   |   |   |   |   |   |   |
|
|
|
|   | . | . |
|
|   |
|
|   |   |   |
| . | . |   |   |   |   |   |   |   |
|   |   | . | . |   |   |   |   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |
|   |
|
Template Sequence |   |
D | I | H | D | I | G | H | R | L | V | T | T | M | L | G | A | N | G | F | Q | I | V | D | L | G | V | D | V | L | N | E | N | V | V | E | E | A | A | K | H | K | G | E | K | V | L | L | V | G | S | A | L | M | T | T | S | M | L | G | Q | K | D | L | M | D | R | L | N | E | E | K | L | R | D | S | V | K | C | M | F |
Template Known Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|  |  |  |  |
|
| S | S |
|
|  |  |  |  |  |  |  |  |  |  | T | T | T | S |
|  |  |  |  |  |  |
| S | S |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  | T | T |
| G | G | G | S |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
104 | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . |
  |
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | S | L | D | S | D | M | N | H | I | L | A | L | E | M | G | A | C | D | Y | I | L | K | T | T | P | P | A | V | L | L | A | R | L |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|
|
|   |
|
|   |   |   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |   |   |   |   |   |   |
| . | . |
|
|
|   |   |   |   |
|
|   |   |
|
|   |   |
|   |   |
|
Template Sequence |   |
G | G | A | P | V | S | D | K | W | I | E | E | I | . |
. |
G | A | D | A | T | A | E | N | A | A | E | A | A | K | V | A | L | E | V |
Template Known Secondary structure |   |
 | S | S | S |
|
|  |  |  |  |  |  |  | . | . | T |
|
| B |
|
| S | S |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |  |  |  |  | . | . |
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
184 | . | . | . | . | . | 190 | . | . | . | . | . | . | |
|
. | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|