Job Description P52108 Confidence 26.85% Date Thu Jan 5 12:05:24 GMT 2012 Rank 391 Aligned Residues 51 % Identity 16% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10				.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.								.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure											.	.	.																									.	.	.	.	.	.	.
Query SS confidence											.	.	.																									.	.	.	.	.	.	.
Query Sequence		N	T	I	V	F	V	E	D	D	.	.	.	A	E	V	G	S	L	I	A	A	Y	L	A	K	H	D	M	Q	V	T	V	E	P	R	G	.	.	.	.	.	.	.	D	Q	A	E	E	T	I	L	R	E	N	P	D	L	V	L	L	D
Query Conservation											.	.	.																									.	.	.	.	.	.	.
Alig confidence											.	.	.																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D
Template Known Secondary structure						B						S	S	S		S											T	T							S	S				T	T													T	T		S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions