Job Description P52108 Confidence 99.90% Date Thu Jan 5 12:05:24 GMT 2012 Rank 37 Aligned Residues 124 % Identity 20% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		T	I	V	F	V	E	D	D	A	E	V	G	S	L	I	A	A	Y	L	A	K	H	D	M	Q	V	T	V	E	P	R	G	D	Q	A	E	E	T	I	L	R	E	N	P	D	L	V	L	L	D	I	M	L	P	G	K	D	G	M	T	I	C	R	D	L	R	A	K	W	.	S	G	P	I	V	L	L	T	S	L
Query Conservation																																																																							.
Alig confidence																																																																							.
Template Conservation
Template Sequence		N	V	L	V	I	E	D	D	K	V	F	R	G	L	L	E	E	Y	L	S	M	K	G	I	K	V	E	S	A	E	R	G	K	E	A	Y	K	L	L	S	E	K	H	F	N	V	V	L	L	D	L	L	L	P	D	V	N	G	L	E	I	L	K	W	I	K	E	R	S	P	E	T	E	V	I	V	I	T	G	H
Template Known Secondary structure																								T							S	S											S			S						S	B		S	S	S	B													T	T	S								T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	D	M	N	H	I	L	A	L	E	M	G	A	C	D	Y	I	L	K	T	T	P	P	A	V	L	L	A	R	L	R	L	H	L	R	Q	N	E	Q	A	T	L	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	T	I	K	T	A	V	E	A	M	K	M	G	A	Y	D	F	L	T	K	P	C	M	L	E	E	I	E	L	T	I	N	K	A	I	E	H	R	K	L	R	K	E	N	E
Template Known Secondary structure		T										T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions