Job Description P38101 Confidence 1.13% Date Thu Jan 5 11:57:58 GMT 2012 Rank 47 Aligned Residues 145 % Identity 7% Template c3ddlB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:xanthorhodopsin; PDBTitle: crystallographic structure of xanthorhodopsin, a light-2 driven ion pump with dual chromophore Resolution 1.90 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.				.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		P	N	N	I	L	A	L	S	S	A	T	S	H	G	F	R	Q	S	T	R	V	L	A	G	M	S	L	G	F	L	I	V	M	L	L	C	A	G	I	S	F	.	.	.	S	L	A	V	I	D	P	A	A	V	H	L	L	S	W	A	G	A	A	Y	I	V	W	L	A	W	K	I	A	T	S	P	T	K	E	D
Query Conservation																																											.	.	.
Alig confidence																																											.	.	.
Template Conservation
Template Sequence		P	L	L	T	V	E	L	V	L	V	M	G	L	P	K	N	E	R	G	P	L	A	A	K	L	G	F	L	A	A	L	M	I	V	L	G	Y	P	G	E	V	S	E	N	A	A	L	F	G	T	R	G	L	W	G	F	L	S	T	I	P	F	V	W	I	L	Y	I	L	F	T	Q	L	G	D	T	I	Q	R	Q
Template Known Secondary structure												S																														T		S				S	S	S																						T	T	T						T	S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	Q	A	K	P	I	S	F	W	A	S	F	A	L	Q	F	V	N	V	K	I	I	L	Y	G	V	T	A	L	S	T	F	V	L	P	Q	T	Q	A	L	S	W	V	V	G	V	S	V	L	L	A	M	I	G	T	F	G	N	V	C	W	A	L	A	G	H	L	F	Q	R	L	F	R	Q
Query Conservation
Alig confidence					.	.	.	.	.	.												.
Template Conservation					.	.	.	.	.	.												.
Template Sequence		S	S	R	.	.	.	.	.	.	V	S	T	L	L	G	N	A	R	L	L	.	L	L	A	T	W	G	F	Y	P	I	A	Y	M	I	P	M	A	N	T	P	G	T	I	V	A	L	Q	V	G	Y	T	I	A	D	V	L	A	K	A	G	Y	G	V	L	I	Y	N	I	A	K	A	K	S	E
Template Known Secondary structure					.	.	.	.	.	.												.														T	T
Template Predicted Secondary structure					.	.	.	.	.	.												.
Template SS confidence
		182	.	.							.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions