Job Description P13669 Confidence 100.00% Date Thu Jan 5 11:33:42 GMT 2012 Rank 1 Aligned Residues 219 % Identity 26% Template c3bwgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 Resolution 2.09 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	I	A	D	R	I	R	E	Q	I	A	R	G	E	L	K	P	G	D	A	L	P	T	E	S	A	L	Q	T	E	F	G	V	S	R	V	T	V	R	Q	A	L	R	Q	L	V	E	Q	Q	I	L	E	S	I	Q	G	S	G	T	Y	V	K	E	E	R	V	N	Y	D	I	F	Q	L	T	S	F	D	E	K
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		Q	Q	I	A	T	E	I	E	T	Y	I	E	E	H	Q	L	Q	Q	G	D	K	L	P	V	L	E	T	L	X	A	Q	F	E	V	S	K	S	T	I	T	K	S	L	E	L	L	E	Q	K	G	A	I	F	Q	V	R	G	S	G	I	F	V	R	K	H	K	R	K	G	Y	I	S	L	L	S	.	.	.	.	.
Template Known Secondary structure															T	T			T	T		B											T	T																T	T	S					T	T	T											S				S	S	G	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	D	R	H	V	D	T	H	S	E	V	L	I	F	E	V	I	P	A	D	D	F	L	Q	Q	Q	L	Q	I	T	P	Q	D	R	V	W	H	V	K	R	V	R	Y	R	K	Q	K	P	M	A	L	E	E	T	W	M	P	L	A	L	F	P	D	L	T	W	Q	V	M	E	N	S	K	Y	H	F	I	E	E
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	N	Q	G	D	F	N	V	T	S	K	V	I	E	L	D	V	R	K	P	T	P	E	A	A	E	N	L	N	I	G	X	D	E	D	I	Y	Y	V	K	R	V	R	Y	I	N	G	Q	T	L	C	Y	E	E	S	Y	Y	T	K	S	I	V	T	Y	L	N	N	E	I	V	S	H	S	I	F	H	Y	I	R	E
Template Known Secondary structure		.	G	G																										T			T	T	S												T	T												T	T	T	S									T	S
Template Predicted Secondary structure		.
Template SS confidence
			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	K	M	V	I	D	R	S	E	Q	E	I	I	P	L	M	P	T	E	E	M	S	R	L	L	N	I	S	Q	T	K	P	I	L	E	K	V	S	R	G	Y	L	V	D	G	R	V	F	E	Y	S	R	N	A	F	N	T	D	D	Y	K	F	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	G	L	K	I	G	F	S	D	L	F	L	H	V	G	Q	L	N	E	E	E	A	E	Y	L	G	L	E	A	G	L	P	K	L	Y	I	E	S	I	F	H	L	T	N	G	Q	P	F	D	Y	S	K	I	S	Y	N	Y	E	Q	S	Q	F	V	V
Template Known Secondary structure		T	S																									T	S		T	T	S												T	T	S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions