Job Description P28861 Confidence 100.00% Date Thu Jan 5 11:45:15 GMT 2012 Rank 17 Aligned Residues 242 % Identity 22% Template c2rc5D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: refined structure of fnr from leptospira interrogans Resolution 2.43 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.															.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.												.	.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	W	V	T	G	K	V	T	K	V	Q	N	W	T	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	S	L	T	V	H	A	P	.	.	V	L	P	F	T	A	G	Q	F	T	K	L	G	L	E	I	.	.	.	.	.	.	.	.	.	.	.	D	G	E	R	V	Q	R	A	Y	S	Y
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	P	Y	K	A	K	V	I	S	N	V	L	L	T	P	E	T	G	T	G	K	R	P	K	K	E	G	E	A	L	V	H	R	I	V	L	A	I	D	H	S	A	Y	P	Y	V	I	G	Q	S	G	G	V	I	P	P	G	E	D	P	E	K	K	A	K	G	L	A	D	V	G	Y	T	V	R	L	Y	S	I
Template Known Secondary structure		T	B													S			T	T	S	S	S	S		T	T	S														T	T	T					T	T								S	S	B								T		S			B								B
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		55	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70											.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure						.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query Sequence		V	N	S	P	.	.	.	.	D	N	P	D	L	E	F	Y	L	V	T	V	.	.	.	.	.	.	.	.	.	.	P	D	G	K	L	S	P	R	L	A	A	L	K	P	G	D	E	V	Q	V	V	S	E	A	A	G	F	F	V	L	D	E	V	P	H	C	E	T	L	W	M	L	A	T	G	T	A	I	G	P
Query Conservation						.	.	.	.													.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	P	S	Y	F	G	M	K	E	D	N	I	E	F	I	I	K	R	D	N	I	Y	D	E	N	G	N	I	Q	F	K	G	V	C	S	N	Y	M	C	D	L	K	P	G	D	E	V	T	M	T	G	P	S	G	K	K	F	L	L	P	N	T	D	F	S	G	D	I	M	F	L	A	T	G	T	G	I	A	P
Template Known Secondary structure			S							S	S											B			B	T	T	T	B		S		B									T			T	T											S	S	S				S	S		B		S								G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure													.	.	.																																																.	.
Query SS confidence													.	.	.																																																.	.
Query Sequence		Y	L	S	I	L	Q	L	G	K	D	L	.	.	.	D	R	F	K	N	L	V	L	V	H	A	A	R	Y	A	A	D	L	S	Y	L	P	L	M	Q	E	L	E	K	R	Y	E	G	K	L	R	I	Q	T	V	V	S	R	E	T	A	A	.	.	G	S	L	T	G	R	I	P	A	L	I	E	S	G	E	L	E
Query Conservation													.	.	.																																																.	.
Alig confidence													.	.	.																																	.															.	.
Template Conservation																																																.
Template Sequence		F	I	G	M	S	E	E	L	L	E	H	K	L	I	K	F	T	G	N	I	T	L	V	Y	G	A	P	Y	S	D	E	L	V	M	M	D	Y	L	K	G	L	E	S	K	H	K	.	N	F	K	L	I	T	A	I	S	R	E	E	K	N	S	F	D	G	G	R	M	Y	I	S	H	R	V	R	E	Q	A	E	A
Template Known Secondary structure											T	T		S	S		B		S									S	S	G	G	G			S												S	.	S								T	T	T		B		T	T	T	S	S	B										T
Template Predicted Secondary structure																																																.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.																						.	.
Query SS confidence																						.	.	.	.	.																						.	.
Query Sequence		S	T	I	G	L	P	M	N	K	E	T	S	H	V	M	L	C	G	N	P	.	.	.	.	.	Q	M	V	R	D	T	Q	Q	L	L	K	E	T	R	Q	M	T	K	H	L	R	.	.	R	R	P	G	H	M	T	A	E	H	Y
Query Conservation																						.	.	.	.	.																						.	.
Alig confidence							.	.	.													.	.	.	.	.																						.	.
Template Conservation							.	.	.
Template Sequence		V	K	K	I	L	.	.	.	N	G	G	G	R	F	Y	I	C	G	G	P	K	G	M	E	K	G	V	I	E	E	I	Q	K	I	S	G	N	T	G	T	Y	E	E	F	K	H	H	L	E	G	A	H	Q	L	F	V	E	T	Y
Template Known Secondary structure							.	.	.		T	T								S	S	T	T	T													T			S												T	T	S
Template Predicted Secondary structure							.	.	.
Template SS confidence
		259	260	.	.	.				.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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