Job Description P28861 Confidence 100.00% Date Thu Jan 5 11:45:15 GMT 2012 Rank 7 Aligned Residues 232 % Identity 19% Template c2r6hC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis Resolution 2.95 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.				.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																														.	.	.	.	.	50	.
Predicted Secondary structure																											.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	V	T	G	K	V	T	K	V	Q	N	W	T	D	A	L	F	S	L	T	V	H	A	P	V	.	.	.	L	P	F	T	A	G	Q	F	T	K	L	G	L	E	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	R	V	Q	R	A
Query Conservation																											.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	W	E	C	E	V	L	S	N	K	N	V	S	T	F	I	K	E	F	V	V	K	L	P	E	G	E	T	X	N	F	K	S	G	S	Y	A	Q	I	K	I	P	K	Y	N	I	R	Y	A	D	Y	D	I	Q	D	R	F	R	G	D	W	D	K	X	D	A	W	S	L	T	C	K	N	E	E	E	T	V	R	A
Template Known Secondary structure													S	S	S	S									S	T	T							T	T														G	G	G															T	G	G	G							S
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		52	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70																.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	Y	V	N	S	P	.	D	N	P	D	L	E	F	Y	L	V	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	G	K	L	S	P	R	L	A	A	L	K	P	G	D	E	V	Q	V	V	S	E	A	A	G	F	F	V	L	D	E	V	P	H	C	E	T	L	W	M	L	A	T	G
Query Conservation									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		Y	S	X	A	N	Y	P	A	E	G	N	I	I	T	L	N	V	R	I	A	T	P	P	F	D	R	A	A	N	K	W	K	A	G	I	K	P	G	I	S	S	S	Y	I	F	S	L	K	P	G	D	K	V	X	X	S	G	P	Y	G	D	F	H	.	.	.	I	Q	D	T	D	A	E	X	L	Y	I	G	G	G
Template Known Secondary structure						S		T	T			S															T	T	T	T				T	T												T			T	T														.	.	.				S	S	S								G
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		T	A	I	G	P	Y	L	S	I	L	Q	L	G	K	D	L	.	D	R	F	K	N	L	V	L	V	H	A	A	R	Y	A	A	D	L	S	Y	L	P	L	M	Q	E	L	E	K	R	Y	E	G	K	L	R	I	Q	T	V	V	S	R	E	T	A	A	G	S	L	T	G	R	I	P	A	L	I	E	S	G	E	L
Query Conservation																		.
Alig confidence																		.																																	.																							.
Template Conservation																																																			.																							.
Template Sequence		A	G	X	A	P	L	R	A	Q	I	L	H	L	F	R	T	L	K	T	G	R	K	V	S	Y	W	Y	G	A	R	S	K	N	E	I	F	Y	E	E	D	F	R	E	I	E	R	E	F	P	.	N	F	K	F	H	I	A	L	S	D	P	Q	P	E	D	N	W	T	G	Y	V	G	.	F	I	H	Q	V	I	Y
Template Known Secondary structure		G	G														T	S				S									S	S	G	G	G			S												T	.	T								S	S			G	G	G				S			S	.
Template Predicted Secondary structure																																																			.																							.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	T	I	G	L	P	M	N	K	E	T	S	H	V	M	L	C	G	N	P	Q	M	V	R	D	T	Q	Q	L	L	K	E	T	R	Q	M	T	K	H	L	R	R	R	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	N	Y	L	K	D	H	D	A	P	E	D	I	E	Y	Y	X	C	G	P	G	P	X	A	N	A	V	K	G	X	L	E	N	L	G	V	P	R	N	X	L	F	F	D	D	F
Template Known Secondary structure				T	T	T	T		S		G	G	G																							T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions