Job Description P28861 Confidence 99.96% Date Thu Jan 5 11:45:15 GMT 2012 Rank 26 Aligned Residues 219 % Identity 21% Template c2qtzA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:methionine synthase reductase; PDBTitle: crystal structure of the nadp+-bound fad-containing fnr-like module of2 human methionine synthase reductase Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.						.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.												.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.												.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	W	V	T	G	K	V	T	K	V	Q	N	W	T	D	.	.	.	.	.	A	L	F	S	L	T	V	H	A	P	V	.	.	L	P	F	T	A	G	Q	F	T	K	L	G	L	E	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.	.	.	.	.												.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.												.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	P	V	F	Q	V	P	I	S	K	A	V	Q	L	T	T	N	D	A	I	K	T	T	L	L	V	E	L	D	I	S	N	T	D	F	S	Y	Q	P	G	D	A	F	S	V	I	C	P	N	S	D	S	E	V	Q	S	L	L	Q	R	L	Q	L	E	D	K	R	E	H	V	L	L	K	I	K	A	D	T	K	K
Template Known Secondary structure																S		T	T		S	S										T	T	S						T	T																					T	T		G	G	G	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	A	T	L	P	Q	H	I	P	A	G	C	S	L	Q	F	I	F	T	W	C	L	E	I	R	A	I	P	K	K	A	F	L	R	A	L	V	D	Y	T	S	D	S	A	E	K	R	R	L	Q	E	L	C	S	K	Q	G	A	A	D	Y	S	R	F	V	R	D	A	A	C	L	L	D	L	L	L	A	F	P
Template Known Secondary structure		T	T					T	T	S		T	T										T	B		T	T	S												T	T	B		S												S	S	T	T								T	T												S	T
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
															45	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.												.	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.	.	.	.	.															.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.	.	.	.	.															.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	R	V	Q	R	A	Y	S	Y	V	N	S	P	.	.	D	N	P	D	L	E	F	Y	L	V	T	V	P	.	.	.	.	.	.	.	.	.	.	.	D	G	K	L	S	P	R	L	A	A	L	K	P	G	.	.	.	D	E	V	Q	V	V	S	E	A	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.	.	.	.	.															.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation
Template Sequence		S	C	Q	P	P	L	S	L	L	L	E	H	L	P	K	L	Q	P	R	P	Y	S	C	A	S	S	S	L	F	H	P	G	K	L	H	F	V	F	N	I	V	E	F	L	S	T	A	T	T	E	V	L	R	K	G	V	C	T	G	W	L	A	L	L	V	A	S	V	L	A	P	K	I	S	I	F	P	R	T	T
Template Known Secondary structure		T	B													B										S		T	T	T	S	T	T														S		S	S		S														G	G	G	T											S
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130							.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.																			.
Query SS confidence																																					.	.	.	.	.	.																			.
Query Sequence		G	F	F	V	L	D	E	V	P	H	C	E	T	L	W	M	L	A	T	G	T	A	I	G	P	Y	L	S	I	L	Q	L	G	K	D	.	.	.	.	.	.	L	D	R	F	K	N	L	V	L	V	H	A	A	R	Y	A	A	D	.	L	S	Y	L	P	L	M	Q	E	L	E	K	R	Y	E	G	K	L	R	I
Query Conservation																																					.	.	.	.	.	.																			.
Alig confidence							.																														.	.	.	.	.	.																			.														.
Template Conservation							.																																																																				.
Template Sequence		N	S	F	H	L	.	P	D	D	P	S	I	P	I	I	M	V	G	P	G	T	G	I	A	P	F	I	G	F	L	Q	H	R	E	K	L	Q	E	Q	H	P	D	G	N	F	G	A	M	W	L	F	F	G	C	R	H	K	D	R	D	Y	L	F	R	K	E	L	R	H	F	L	K	H	.	G	I	L	T	H	L
Template Known Secondary structure							.		S	S	T	T	S								G	G	G	G																	S	T	T													S		T	T	T			T	T										T	.	T	S	S
Template Predicted Secondary structure							.																																																																				.
Template SS confidence
		528	.	530	.	.		.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		Q	T	V	V	S	R	E	T	A	A	G	S	L	T	G	R	I	P	A	L	I	E	S	G	E	L	E	S	T	I	G	L	P	M	N	K	E	T	S	H	V	M	L	C	G	N	.	P	Q	M	V	R	D	T	Q	Q	L	L	K	E
Query Conservation																																																.
Alig confidence														.	.	.										.	.																					.
Template Conservation														.	.	.										.	.
Template Sequence		K	V	S	F	S	R	D	A	P	P	A	K	.	.	.	Y	V	Q	D	N	I	Q	L	H	.	.	G	Q	Q	V	A	R	I	L	L	Q	E	N	G	H	I	Y	V	C	G	D	A	K	N	M	A	K	D	V	H	D	A	L	V	Q
Template Known Secondary structure						S	S							.	.	.	S								T	.	.											S									S
Template Predicted Secondary structure														.	.	.										.	.
Template SS confidence
		606	.	.	.	610	.	.	.	.	.	.	.				.	.	620	.	.	.	.	.	.			.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions