Return to main results Retrieve Phyre Job Id

Job DescriptionP28861
Confidence100.00%DateThu Jan 5 11:45:15 GMT 2012
Rank14Aligned Residues226
% Identity19%Templatec1tvcA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:methane monooxygenase component c; PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath)
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20........ .30.........40.........50.........60 .........70......
Predicted Secondary structure 






.......
















.







Query SS confidence 























. . . . . . .































.















Query Sequence  VTGKVTKVQNWTDALFSLTVHAPV. . . . . . . LPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN. PDLEFYLVTVPDGKLS
Query Conservation    
 
  
   
     
 
  
 .......    


 
 
     
    
  

 
    .               
Alig confidence 























.......
















..












.















Template Conservation      
      
  
  
 
  
            


 
 
      ..  
  

             
        
Template Sequence  FEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGTD. . VSRSYSPANLPNPEGRLEFLIRVLPEGRFS
Template Known Secondary structure  B


TT
SSTTSSSSS

S

S


TTS
S..SS

B

SSSS




TTSSS
Template Predicted Secondary structure 























..












Template SS confidence 















































































   12.......20.........30.........40.........50......... 60.........70.........80.........
 
   77..80.........90.........100.........110.........120.........130.........140.........150......
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  PRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQ
Query Conservation                    
              
 



 

 
  
    
        
 
    
          
 
Alig confidence 























.






















































Template Conservation    
                     .        





 



  
 
           
 
    
          
 
Template Sequence  DYLRNDARVGQVLSVKGPLGVFGL. KERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELK
Template Known Secondary structure  SSSSS


S
.


SSS
SSTTT

S

SSSTT


Template Predicted Secondary structure 













.



















Template SS confidence 















































































   90.........100.........110... ......120.........130.........140.........150.........160........
 
   157..160.........170.........180.........190.........200.........210.........220.........230......
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  ELEKRYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLR
Query Conservation   
              
         
          
              
 



  
   
   
   

    

Alig confidence 






































.......

































Template Conservation   
             
                    
  .......      
 



  
   
   
   

    
 
Template Sequence  SLERSMRNLTVKACVWHPSGDWEGEQGSPIDALREDLES. . . . . . . SDANPDIYLCGPPGMIDAACELVRSRGIPGEQVF
Template Known Secondary structure  SSS


SS
SS

SSSSSSSS.......SSSSSSS



S
Template Predicted Secondary structure 




















.......










Template SS confidence 















































































   169170.........180.........190.........200....... ..210.........220.........230.........240.
 
   237..240
Predicted Secondary structure 



Query SS confidence 



Query Sequence  RRPG
Query Conservation      
Alig confidence 



Template Conservation   
 
Template Sequence  FEKF
Template Known Secondary structure 


Template Predicted Secondary structure 
Template SS confidence 



   242...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions