Job Description P28861 Confidence 99.96% Date Thu Jan 5 11:45:15 GMT 2012 Rank 25 Aligned Residues 221 % Identity 21% Template c1tllA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.						.	.	20	.	.	.	.	.	.	.	.				.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.												.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.												.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	W	V	T	G	K	V	T	K	V	Q	N	W	T	D	.	.	.	.	.	A	L	F	S	L	T	V	H	A	P	V	.	.	.	L	P	F	T	A	G	Q	F	T	K	L	G	L	E	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.	.	.	.	.												.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.												.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	R	V	S	A	A	R	L	L	S	R	Q	N	L	Q	S	P	K	S	S	R	S	T	I	F	V	R	L	H	T	N	G	N	Q	E	L	Q	Y	Q	P	G	D	H	L	G	V	F	P	G	N	H	E	D	L	V	N	A	L	I	E	R	L	E	D	A	P	P	A	N	H	V	V	K	V	E	M	L	E	E	R
Template Known Secondary structure		S														S		T	T		S	S										T	T		G	G	G				T	T																			T	T		S	S				S		S
Template Predicted Secondary structure
Template SS confidence
		990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	A	L	G	V	I	S	N	W	K	D	E	S	R	L	P	P	C	T	I	F	Q	A	F	K	Y	Y	L	D	I	T	T	P	P	T	P	L	Q	L	Q	Q	F	A	S	L	A	T	N	E	K	E	K	Q	R	L	L	V	L	S	K	G	L	Q	E	Y	E	E	W	K	W	G	K	N	P	T	M	V	E	V
Template Known Secondary structure				S	S	S										S	S		S	B									T	B			S	S												T	T	B													T	T		S
Template Predicted Secondary structure
Template SS confidence
		1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.
																				45	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.												.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	R	V	Q	R	A	Y	S	Y	V	N	S	P	.	.	D	N	P	D	L	E	F	Y	L	V	T	V	P	.	.	.	.	.	.	.	.	.	.	.	D	G	K	L	S	P	R	L	A	A	L	K	P	G	D	E	V	Q	V	V	S	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	E	F	P	S	I	Q	M	P	A	T	L	L	L	T	Q	L	S	L	L	Q	P	R	Y	Y	S	I	S	S	S	P	D	M	Y	P	D	E	V	H	L	T	V	A	I	V	S	Y	H	T	R	D	G	E	G	P	V	H	H	G	V	C	S	S	W	L	N	R	I	Q	A	D	D	V	V	P	C	F	V	R
Template Known Secondary structure					S	T	T	B											S		B								B		S		T	T	T	S	T	T													T	G	G	G	T	S												T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.						.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.																	.
Query SS confidence																																								.	.	.	.	.																	.
Query Sequence		A	A	G	F	F	V	L	D	E	V	P	H	C	E	T	L	W	M	L	A	T	G	T	A	I	G	P	Y	L	S	I	L	Q	L	G	K	D	L	.	.	.	.	.	D	R	F	K	N	L	V	L	V	H	A	A	R	Y	A	A	.	D	L	S	Y	L	P	L	M	Q	E	L	E	K	R	Y	E	G	K	L	R
Query Conservation																																								.	.	.	.	.																	.
Alig confidence									.																															.	.	.	.	.																	.															.
Template Conservation									.																																																																			.
Template Sequence		G	A	P	S	F	H	L	.	P	R	N	P	Q	V	P	C	I	L	V	G	P	G	T	G	I	A	P	F	R	S	F	W	Q	Q	R	Q	F	D	I	Q	H	K	G	M	N	P	C	P	M	V	L	V	F	G	C	R	Q	S	K	I	D	H	I	Y	R	E	E	T	L	Q	A	K	N	K	.	G	V	F	R	E
Template Known Secondary structure				G	G	G	S		.		S		T	T	S								G	G	G	G	T	T															S														S		T	T	T	T		T	T										T	.	T	S
Template Predicted Secondary structure									.																																																																			.
Template SS confidence
		1230	.	.	.	.	.	.		.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.		.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	T	V	V	S	R	E	T	A	A	G	S	L	T	G	R	I	P	A	L	I	E	S	G	E	L	E	S	T	I	G	L	P	M	N	K	E	T	S	H	V	M	L	C	G	N	P	Q	M	V	R	D	T	Q	Q	L	L	K	E
Query Conservation
Alig confidence												.	.																	.
Template Conservation												.	.																	.
Template Sequence		L	Y	T	A	Y	S	R	E	P	D	.	.	R	P	K	K	Y	V	Q	D	V	L	Q	E	Q	L	A	E	.	S	V	Y	R	A	L	K	E	Q	G	G	H	I	Y	V	C	G	D	V	T	M	A	A	D	V	L	K	A	I	Q	R
Template Known Secondary structure							S	S		T	T	.	.	S												S	S			.								T	S
Template Predicted Secondary structure												.	.																	.
Template SS confidence
		1308	.	1310	.	.	.	.	.	.	.			.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.		.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions