Job Description P28861 Confidence 100.00% Date Thu Jan 5 11:45:15 GMT 2012 Rank 16 Aligned Residues 237 % Identity 22% Template c1jb9A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of the ferredoxin:nadp+ reductase from maize root at2 1.7 angstroms Resolution 1.70 Å

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		5	.	.	.	.	10	.	.	.	.	.	.						.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.							.	.	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.												.																			.	.	.	.	.	.														.	.	.	.	.
Query SS confidence														.	.	.	.	.												.																			.	.	.	.	.	.														.	.	.	.	.
Query Sequence		V	T	G	K	V	T	K	V	Q	N	W	T	.	.	.	.	.	D	A	L	F	S	L	T	V	H	A	P	.	V	L	P	F	T	A	G	Q	F	T	K	L	G	L	E	I	D	G	.	.	.	.	.	.	E	R	V	Q	R	A	Y	S	Y	V	N	S	P	.	.	.	.	.	D	N	P	D	L	E	F	Y	L
Query Conservation														.	.	.	.	.												.																			.	.	.	.	.	.														.	.	.	.	.
Alig confidence														.	.	.	.	.												.																			.	.	.	.	.	.														.	.	.	.	.
Template Conservation
Template Sequence		F	T	A	T	I	V	S	V	E	S	L	V	G	P	K	A	P	G	E	T	C	H	I	V	I	D	H	G	G	N	V	P	Y	W	E	G	Q	S	Y	G	V	I	P	P	G	E	N	P	K	K	P	G	A	P	Q	N	V	R	L	Y	S	I	A	S	T	R	Y	G	D	N	F	D	G	R	T	G	S	L	C	V
Template Known Secondary structure													S		T	T	S	S	S										T	T	S	S				T	T								S	S	B		T	T	S	T	T		B								B		S		T	T	T	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		68	.	70	.														.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	K	L	S	P	R	L	A	A	L	K	P	G	D	E	V	Q	V	V	S	E	A	A	G	F	F	V	L	D	E	V	P	H	C	E	T	L	W	M	L	A	T	G	T	A	I	G	P	Y	L	S	I	L	Q	L	G	K	D	L	D	R	F
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	A	V	Y	Y	D	P	E	T	G	K	E	D	P	S	K	N	G	V	C	S	N	F	L	C	N	S	K	P	G	D	K	I	Q	L	T	G	P	S	G	K	I	M	L	L	P	E	E	D	P	N	A	T	H	I	M	I	A	T	G	T	G	V	A	P	F	R	G	Y	L	R	R	M	F	M	E	D	V	P
Template Known Secondary structure							B		T	T	T			B		G	G	G	S									T			T	T											S	T	T					S		T	T									G	G	G	G												T				T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		135						.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.
Query SS confidence			.	.	.	.	.
Query Sequence		K	.	.	.	.	.	N	L	V	L	V	H	A	A	R	Y	A	A	D	L	S	Y	L	P	L	M	Q	E	L	E	K	R	Y	E	G	K	L	R	I	Q	T	V	V	S	R	E	T	A	A	G	S	L	T	G	R	I	P	A	L	I	E	S	G	E	L	E	S	T	I	G	L	P	M	N	K	E	T	S	H	V
Query Conservation			.	.	.	.	.
Alig confidence			.	.	.	.	.																																														.	.	.																			.	.	.
Template Conservation																																																					.	.	.																			.	.	.
Template Sequence		N	Y	R	F	G	G	L	A	W	L	F	L	G	V	A	N	S	D	S	L	L	Y	D	E	E	F	T	S	Y	L	K	Q	Y	P	D	N	F	R	Y	D	K	A	L	S	R	E	Q	K	G	K	M	.	.	.	Y	V	Q	D	K	I	E	E	Y	S	D	E	I	F	K	L	L	D	.	.	.	G	G	A	H	I
Template Known Secondary structure		T					S									S	S	G	G	G		S	S												T	T	T								T	T	T						.	.	.									T										.	.	.	T	T
Template Predicted Secondary structure																																																					.	.	.																			.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.				.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.
		210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.																				.	.	.
Query SS confidence										.	.	.	.																				.	.	.
Query Sequence		M	L	C	G	N	P	Q	M	.	.	.	.	V	R	D	T	Q	Q	L	L	K	E	T	R	Q	M	T	K	H	L	R	.	.	.	R	R	P	G	H	M	T	A	E	H	Y
Query Conservation										.	.	.	.																				.	.	.
Alig confidence										.	.	.	.																				.	.	.
Template Conservation
Template Sequence		Y	F	C	G	L	K	G	M	M	P	G	I	Q	D	T	L	K	K	V	A	E	R	R	G	E	S	W	D	Q	K	L	A	Q	L	K	K	N	K	Q	W	H	V	E	V	Y
Template Known Secondary structure							G	G	G																T													T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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