Job Description P28861 Confidence 100.00% Date Thu Jan 5 11:45:15 GMT 2012 Rank 13 Aligned Residues 240 % Identity 21% Template c1fncA_ PDB info PDB header:oxidoreductase (nadp+(a),ferredoxin(a)) Chain: A: PDB Molecule:ferredoxin-nadp+ reductase; PDBTitle: refined crystal structure of spinach ferredoxin reductase2 at 1.7 angstroms resolution: oxidized, reduced, and 2'-3 phospho-5'-amp bound states Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.						.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.											.																							.	.	.	.										.	.	.	.	.
Query SS confidence															.	.	.	.	.											.																							.	.	.	.										.	.	.	.	.
Query Sequence		V	T	G	K	V	T	K	V	Q	N	W	T	D	.	.	.	.	.	A	L	F	S	L	T	V	H	A	P	.	V	L	P	F	T	A	G	Q	F	T	K	L	G	L	E	I	D	G	E	R	V	Q	.	.	.	.	R	A	Y	S	Y	V	N	S	P	.	.	.	.	.	D	N	P	D	L	E	F	Y	L	V	T
Query Conservation															.	.	.	.	.											.																							.	.	.	.										.	.	.	.	.
Alig confidence															.	.	.	.	.											.																							.	.	.	.										.	.	.	.	.
Template Conservation
Template Sequence		Y	V	G	R	C	L	L	N	T	K	I	T	G	D	D	A	P	G	E	T	W	H	M	V	F	S	H	E	G	E	I	P	Y	R	E	G	Q	S	V	G	V	I	P	D	G	E	D	K	N	G	K	P	H	K	L	R	L	Y	S	I	A	S	S	A	L	G	D	F	G	D	A	K	S	V	S	L	C	V	K	R
Template Known Secondary structure													S		T	T	S	S	S										T	T						T	T								S	S	B		T	T	S		B										S		T	T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		70	.										.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.
Query Sequence		V	P	.	.	.	.	.	.	.	.	.	D	G	K	L	S	P	R	L	A	A	L	K	P	G	D	E	V	Q	V	V	S	E	A	A	G	F	F	V	L	D	E	V	P	H	C	E	T	L	W	M	L	A	T	G	T	A	I	G	P	Y	L	S	I	L	Q	L	G	K	D	L	D	R	F	K	.	.	.	.	.
Query Conservation				.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.																																.																																	.	.	.	.	.
Template Conservation																																												.
Template Sequence		L	I	Y	T	N	D	A	G	E	T	I	K	G	V	C	S	N	F	L	C	D	L	K	P	G	A	E	V	K	L	T	G	P	V	G	K	E	M	L	M	P	K	.	D	P	N	A	T	I	I	M	L	G	T	G	T	G	I	A	P	F	R	S	F	L	W	K	M	F	F	E	K	H	D	D	Y	K	F	N	G
Template Known Secondary structure							T	T	S													T			T	T											S	T	T			B	S	.		T	T									G	G	G	G												S			B	T	T	B				S
Template Predicted Secondary structure																																												.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		N	L	V	L	V	H	A	A	R	Y	A	A	D	L	S	Y	L	P	L	M	Q	E	L	E	K	R	Y	E	G	K	L	R	I	Q	T	V	V	S	R	E	T	.	A	A	G	S	L	T	G	R	I	P	A	L	I	E	S	G	E	L	E	S	T	I	G	L	P	M	N	K	E	T	S	H	V	M	L	C	G	N
Query Conservation																																											.
Alig confidence																																											.																	.	.
Template Conservation																																																												.	.
Template Sequence		L	A	W	L	F	L	G	V	P	T	S	S	S	L	L	Y	K	E	E	F	E	K	M	K	E	K	A	P	D	N	F	R	L	D	F	A	V	S	R	E	Q	T	N	E	K	G	E	K	M	Y	I	Q	T	R	M	A	Q	Y	.	.	A	V	E	L	W	E	M	L	K	K	D	N	T	Y	V	Y	M	C	G	L
Template Known Secondary structure										S	S	G	G	G		T	T												T	T	T								T	T	T		B		T	T			B									T	T	.	.								T	T	S	T	T
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.									.	.	.
Query SS confidence																.	.	.	.									.	.	.
Query Sequence		P	Q	M	V	R	D	T	Q	Q	L	L	K	E	T	.	.	.	.	R	Q	M	T	K	H	L	R	.	.	.	R	R	P	G	H	M	T	A	E	H	Y
Query Conservation																.	.	.	.									.	.	.
Alig confidence																.	.	.	.									.	.	.
Template Conservation
Template Sequence		K	G	M	E	K	G	I	D	D	I	M	V	S	L	A	A	A	E	G	I	D	W	I	E	Y	K	R	Q	L	K	K	A	E	Q	W	N	V	E	V	Y
Template Known Secondary structure																		T	T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions