Job Description P28861 Confidence 100.00% Date Thu Jan 5 11:45:15 GMT 2012 Rank 19 Aligned Residues 232 % Identity 16% Template c1cneA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nitrate reductase; PDBTitle: structural studies on corn nitrate reductase: refined2 structure of the cytochrome b reductase fragment at 2.53 angstroms, its adp complex and an active site mutant and4 modeling of the cytochrome b domain Resolution 3.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																										.	.	.	.																																	.													.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.																																	.													.	.	.	.	.	.	.
Query Sequence		V	T	G	K	V	T	K	V	Q	N	W	T	D	A	L	F	S	L	T	V	H	A	P	V	.	.	.	.	L	P	F	T	A	G	Q	F	T	K	L	G	L	E	I	D	G	E	R	V	Q	R	A	Y	S	Y	V	N	S	P	D	N	.	P	D	L	E	F	Y	L	V	T	V	P	D	.	.	.	.	.	.	.
Query Conservation																										.	.	.	.																																	.													.	.	.	.	.	.	.
Alig confidence																										.	.	.	.																																	.													.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	H	C	R	L	V	A	K	K	E	L	S	R	D	V	R	L	F	R	F	S	L	P	S	P	D	Q	V	L	G	L	P	I	G	K	H	I	F	V	C	A	T	I	E	G	K	L	C	M	R	A	Y	T	P	T	S	M	V	D	E	I	G	H	F	D	L	L	V	K	V	Y	F	K	N	E	H	P	K	F	P
Template Known Secondary structure													B	T	T									S	S	T	T	S						T	T			B			B			B	T	T	B						B				S		T	T			S											S	S	S		T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
				73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.									100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140
Predicted Secondary structure		.	.																												.	.	.	.	.	.	.	.																																					.	.
Query SS confidence		.	.																												.	.	.	.	.	.	.	.																																					.	.
Query Sequence		.	.	G	K	L	S	P	R	L	A	A	L	K	P	G	D	E	V	Q	V	V	S	E	A	A	G	F	F	V	.	.	.	.	.	.	.	.	L	D	E	V	P	H	C	E	T	L	W	M	L	A	T	G	T	A	I	G	P	Y	L	S	I	L	Q	L	G	K	D	L	D	R	F	K	.	.	N	L	V	L	V
Query Conservation		.	.																												.	.	.	.	.	.	.	.																																					.	.
Alig confidence		.	.																												.	.	.	.	.	.	.	.																																					.	.
Template Conservation
Template Sequence		N	G	G	L	M	T	Q	Y	L	D	S	L	P	V	G	S	Y	I	D	V	K	G	P	L	G	H	V	E	Y	T	G	R	G	S	F	V	I	N	G	K	Q	R	N	A	R	R	L	A	M	I	C	G	G	S	G	I	T	P	M	Y	Q	I	I	Q	A	V	L	R	D	Q	P	E	D	H	T	E	M	H	L	V
Template Known Secondary structure		T											S		T	T				B							S					S	S	S					S	S	S					S								S	S		S													S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		H	A	A	R	Y	A	A	D	L	S	Y	L	P	L	M	Q	E	L	E	K	R	Y	E	G	K	L	R	I	Q	T	V	V	S	R	E	T	A	A	G	S	L	T	G	R	I	P	A	L	I	E	S	G	E	L	E	S	T	I	G	L	P	M	N	K	E	T	S	H	V	M	L	C	G	N	P	Q	M	V	R	.
Query Conservation																																																																																	.
Alig confidence																																																											.	.																					.
Template Conservation																																																											.	.
Template Sequence		Y	A	N	R	T	E	D	D	I	L	L	R	D	E	L	D	R	W	A	A	E	Y	P	D	R	L	K	V	W	Y	V	I	D	Q	V	K	R	P	E	E	G	W	K	Y	S	V	G	F	V	T	E	A	V	L	R	E	H	.	.	V	P	E	G	G	D	D	T	L	A	L	A	S	G	P	P	P	M	I	Q	F
Template Known Secondary structure					S	B	T	T			T	T	S					T					S	T	T	T								S	B		S		T	T	T				S	B		S	S								T	T	.	.	S				T	T	T							S		T					T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	Q	Q	L	L	K	E	T	R	Q	M	T	K	H	L	R	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	S	P	N	L	E	K	M	K	Y	D	M	A	N	S	F	V	V
Template Known Secondary structure		T	T	S	S					T	T			S	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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