Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9G8
Confidence98.10%DateThu Jan 5 11:10:10 GMT 2012
Rank20Aligned Residues79
% Identity18%Templated1lnwa_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain MarR-like transcriptional regulators
Resolution2.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.. .......40.........50.........60.........70.... .....80.........90..
Predicted Secondary structure 

..













..

Query SS confidence 















. .









































. .

















Query Sequence  ADPRRISLLKHIALSG. . SISQGAKDAGISYKSAWDAINEMNQLSEHILVERATGGKGGG. . GAVLTRYGQRLIQLYDLL
Query Conservation   
 
 
    

 
 
..
 
 

  
 


 


  
  

  

  

 
      

..
  

  
  

  
  
Alig confidence 















..

























...












..

















Template Conservation 

     

  
      
  


    
    


 
  
   ...


 
     
 
   
 

  
          
Template Sequence  LTPPDVHVLKLIDEQRGLNLQDLGRQXCRDKALITRKIRELEGR. . . NLVRRERNPSDQRSFQLFLTDEGLAIHQHAEAI
Template Known Secondary structure 

SSTT
BTT

T...TS
SSSSSS
Template Predicted Secondary structure 









...






Template SS confidence 















































































   35....40.........50.........60.........70........ .80.........90.........100.........110.
 
   93.....
Predicted Secondary structure 
Query SS confidence 





Query Sequence  AQIQQK
Query Conservation 
     
Alig confidence 





Template Conservation        
Template Sequence  XSRVHD
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 





   112.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions