Job Description P0A9G8 Confidence 60.85% Date Thu Jan 5 11:10:10 GMT 2012 Rank 282 Aligned Residues 126 % Identity 10% Template c3onmB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator lrha; PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150											.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	S	R	F	S	L	Q	T	S	A	R	N	Q	W	F	G	T	I	T	A	R	D	H	D	D	V	Q	Q	H	V	D	V	L	.	.	.	.	.	.	.	.	.	.	L	A	D	G	K	T	R	L	K	V	A	I	T	A	Q	S	G	A	R	L	G	L	D	E	G	K	E	V	L	I	L	L	K	A	P	W
Query Conservation																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																													.							.	.	.	.	.	.	.	.	.	.
Template Conservation																													.
Template Sequence		S	L	I	I	G	A	S	D	D	T	A	D	T	L	L	P	F	L	L	N	R	V	A	T	L	Y	P	.	L	A	I	D	V	R	V	K	R	S	P	F	I	A	D	M	L	S	S	G	E	V	D	L	A	I	T	T	A	K	V	D	S	H	P	H	V	I	L	R	T	S	P	T	L	W	Y	C	S	V	D	Y
Template Known Secondary structure													T	T	T									T	T	S			.										G	G	G							T	T	S		S					S	S			S	S	S																T	T
Template Predicted Secondary structure																													.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		V	G	I	T	Q	D	E	A	V	A	Q	N	A	D	N	Q	L	P	G	I	I	.	.	.	S	H	I	E	R	G	A	E	Q	C	E	V	L	M	A	L	P	D	G	Q	T	L	C	A	T	V	P	V	N	E	A	T	S	L	Q	Q
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		Q	F	Q	P	G	E	P	V	P	L	V	V	M	D	E	P	S	L	Y	R	E	M	A	I	E	H	L	T	Q	A	G	V	P	W	R	I	A	Y	V	A	S	S	L	S	A	I	R	A	A	V	R	A	G	L	G	V	T	A	R	P
Template Known Secondary structure					S	S	S								S	S	S														T	T										S	S										T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions