Job Description P0A9G8 Confidence 99.95% Date Thu Jan 5 11:10:10 GMT 2012 Rank 3 Aligned Residues 218 % Identity 13% Template c1iz1B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:lysr-type regulatory protein; PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator Resolution 2.50 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	P	R	R	I	S	L	L	K	H	I	A	L	S	G	S	I	S	Q	G	A	K	D	A	G	I	S	Y	K	S	A	W	D	A	I	N	E	M	N	Q	L	S	E	H	I	L	V	E	R	A	T	G	G	K	G	G	G	G	A	V	L	T	R	Y	G	Q	R	L	I	Q	L	Y	D	L	L	A	Q	I	Q
Query Conservation
Alig confidence																																																						.	.	.	.	.
Template Conservation																																																						.	.	.	.	.
Template Sequence		M	E	F	R	Q	L	K	Y	F	I	A	V	A	E	A	G	N	M	A	A	A	A	K	R	L	H	V	S	Q	P	P	I	T	R	Q	M	Q	A	L	E	A	D	L	G	V	V	L	L	E	R	S	H	.	.	.	.	.	R	G	I	E	L	T	A	A	G	H	A	F	L	E	D	A	R	R	I	L	E	L	A
Template Known Secondary structure																		S									T	S																	T	S							S	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																						.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150											.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	K	A	F	D	V	L	S	D	D	D	A	L	P	L	N	S	L	L	A	A	I	S	R	F	S	L	Q	T	S	A	R	N	Q	W	F	G	T	I	T	A	R	D	H	D	D	V	Q	Q	H	V	D	V	L	.	.	.	.	.	.	.	.	.	.	L	A	D	G	K	T	R	L	K	V	A	I	T	A	Q	S
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.
Template Sequence		G	R	S	G	D	R	S	R	A	A	A	R	G	D	V	G	E	L	S	V	A	Y	F	G	T	P	I	Y	R	S	.	.	.	.	L	P	L	L	L	R	A	F	L	T	S	T	P	T	A	T	V	S	L	T	H	M	T	K	D	E	Q	V	E	G	L	L	A	G	T	I	H	V	G	F	S	R	F	F	P	R
Template Known Secondary structure														T	S	S									S	G	G	G	G	T		.	.	.	.												S	T	T																				T	S		S					S
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	R	L	G	L	D	E	G	K	E	V	L	I	L	L	K	A	P	W	V	G	I	T	Q	D	E	A	V	A	Q	N	A	D	N	Q	L	P	G	I	I	S	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	R	G	A	E	Q	C	E	V	L	M	A	L	P	D	G	Q	T	L	C	A
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	P	G	I	E	I	V	N	I	A	Q	E	D	L	Y	L	A	V	H	R	S	Q	S	G	K	F	G	K	T	C	K	L	A	D	L	R	A	V	E	L	T	L	F	P	R	G	G	R	P	S	F	A	D	E	V	I	G	L	F	K	H	A	G	I	E	P	R	I	A	R	V	V	E	D	A	T	A	A	L	A
Template Known Secondary structure			T	T																	G	G	G	G	G	G	T	T	T				G	G	G	G	T	T	S							S	S	S	S	S														T										S	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		232	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	P	V	N	E	A	T	S	L	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	M	A	G	A	A	S	S	I	V	P
Template Known Secondary structure					T	T	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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