Job Description P45425 Confidence 85.37% Date Thu Jan 5 12:02:38 GMT 2012 Rank 154 Aligned Residues 96 % Identity 19% Template c3psiA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) Resolution 3.30 Å

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		1	.	.	.	.	.	.	.	.						10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure											.	.	.	.	.																						.	.
Query SS confidence											.	.	.	.	.																						.	.
Query Sequence		M	T	T	L	A	I	D	I	G	.	.	.	.	.	G	T	K	L	A	A	A	L	I	G	A	D	G	Q	I	R	D	R	R	E	L	.	.	P	T	P	A	S	Q	T	P	E	A	L	R	D	A	L	S	A	L	V	S	P	L	Q	A	H	A	Q	R	V	A	I	A	S	T	G	I	I	R	D	G	S	L	L
Query Conservation											.	.	.	.	.																						.	.
Alig confidence											.	.	.	.	.																						.	.																																					.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		P	K	I	L	S	L	T	C	G	Q	G	R	F	G	A	D	A	I	I	A	V	Y	V	N	R	K	G	D	F	I	R	D	Y	K	I	V	D	N	P	F	D	K	T	N	P	E	K	F	E	D	T	L	D	N	I	I	Q	S	C	Q	P	N	A	I	G	I	N	G	P	N	P	K	T	.	.	.	.	.	.	.
Template Known Secondary structure										T	T			T	T	T	T									T	T	S										S		T	T		S	S		S																	S							S	S	T			.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		748	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																									.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.
Query Sequence		A	L	N	P	H	N	L	G	G	L	L	H	F	P	L	V	K	T	L	E	Q	L	T	.	.	.	.	.	.	.	N	L	P	T	I	A	I	N	D	A	Q	A	A	A	W
Query Conservation																									.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Q	K	F	Y	K	R	L	Q	E	V	L	H	K	K	Q	I	V	D	S	R	G	H	T	I	P	I	I	Y	V	E	D	E	V	A	I	R	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.														T	T		B		S	S	S		B									T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										821	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions