Job Description P45425 Confidence 97.14% Date Thu Jan 5 12:02:38 GMT 2012 Rank 106 Aligned Residues 259 % Identity 16% Template c2v7yA_ PDB info PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state Resolution 2.37 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.												.	.	.	.	.	.	.	30	.	.	.	.	.
Predicted Secondary structure				.																					.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.																					.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	.	T	L	A	I	D	I	G	G	T	K	L	A	A	A	L	I	G	A	D	G	.	.	.	.	.	.	.	.	.	.	.	Q	I	R	D	R	R	E	L	P	T	P	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation				.																					.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																					.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	S	K	I	I	G	I	D	L	G	T	T	N	S	C	V	A	V	L	E	G	G	E	V	K	V	I	P	N	P	E	G	N	R	T	T	P	S	V	V	A	F	K	N	G	E	R	L	V	G	E	V	A	K	R	Q	A	I	T	N	P	N	T	I	I	S	I	K	R	H	M	G	T	D	Y	K	V	E	I	E
Template Known Secondary structure												S	S									T	T								T	T	S		S	S								S	S	S	S				S					T	T	T	T	T		S	S					G	G	G	T	T	T	S							T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
					36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	Q	T	P	E	A	L	R	D	A	L	S	A	L	V	S	P	L	Q	A	H	A	Q	R	V	A	I	A	S	T	G	I	I	R	D	G	S	L	L	A	L	N	P	H	N	L	G	G	L	L	H	F	P	L	V	K	T	L	E	Q	L	T	N	L	P	T	I	A	I	N	D	A	Q	A	A	A	W	A
Query Conservation		.	.	.
Alig confidence		.	.	.																												.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.
Template Sequence		G	K	Q	Y	T	P	Q	E	I	S	A	I	I	L	Q	Y	L	K	S	Y	A	E	D	Y	L	G	E	P	V	T	.	.	.	.	.	.	.	.	R	A	V	I	T	V	P	A	Y	F	N	D	A	Q	R	Q	A	T	K	D	A	G	R	I	A	G	L	E	V	E	R	I	I	N	E	P	T	A	A	A	L	A
Template Known Secondary structure		T																									T	S				.	.	.	.	.	.	.	.								T	T																T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110									.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	Q	A	L	D	G	D	I	T	D	M	V	F	I	T	V	S	T	G	V	G	G	G	V	V	S	G	C	K	L	L	T	G	P	G	G	L	A	G	H	I	G	H	T	L	A	D	P	H	G	P	V	C	G	C	G	R	T	G	C	V	E	A	I	A	S	G	R	G	I	A	A	A	A	Q	G	E	L	A
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	L	D	K	E	E	D	Q	T	I	L	V	Y	D	L	G	G	G	T	F	D	V	S	I	L	E	L	G	D	.	.	.	.	.	.	.	.	.	.	.	.	G	V	F	E	V	K	A	T	A	G	D	N	H	L	G	G	D	D	F	D	Q	V	I	I	D	Y	L	V	N	Q	F	K	Q	E	H	G	I	D
Template Known Secondary structure		T	T	G	G	G	S		S										S	S											T	.	.	.	.	.	.	.	.	.	.	.	.	T											T	T		S																					S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.													.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.																														.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	D	A	K	T	I	F	T	R	A	G	Q	G	D	E	Q	A	Q	Q	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	S	A	R	T	L	A	R	L	I	A	D	I	K	A	T	T	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	K	D	K	M	A	L	Q	R	L	K	D	A	A	E	K	A	K	K	E	L	S	G	V	T	Q	T	Q	I	S	L	P	F	I	S	A	N	E	N	G	P	L	H	L	E	M	T	L	T	R	A	K	F	E	E	L	S	A	H	L	V	E	R	T	M	G	P	V	R	Q	A	L	Q	D	A	G	L	T	P
Template Known Secondary structure		G	G	G																			T	T	T		S													T	T																		T						T	T												T			G
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
			233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	C	Q	C	V	V	V	G	G	S	V	G	L	A	E	G	Y	L	A	L	V	E	T	Y	L	A	Q	E	P	A	A	F	H	V	D	L	L	A	A	H	Y	R	H	D	A	G	L	L	G	A	A	L	L	A
Query Conservation		.
Alig confidence		.																													.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.
Template Sequence		A	D	I	D	K	V	I	L	V	G	G	S	T	R	I	P	A	V	Q	E	A	I	K	R	E	L	G	K	E	.	.	.	.	.	.	.	P	H	K	G	V	N	P	D	E	V	V	A	I	G	A	A	I	Q	G
Template Known Secondary structure		G	G		S						S	G	G	G	G													S	S		.	.	.	.	.	.	.		B			S		T	T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.								330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions