Job Description P45425 Confidence 98.56% Date Thu Jan 5 12:02:38 GMT 2012 Rank 62 Aligned Residues 264 % Identity 24% Template c2nlxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: crystal structure of the apo e. coli xylulose kinase Resolution 2.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.									.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.																		.	.	.	.	.													.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.																		.	.	.	.	.													.	.	.	.
Query Sequence		T	L	A	I	D	I	G	G	T	K	L	A	A	A	L	I	G	A	D	G	Q	I	R	D	R	R	E	L	P	T	P	A	S	Q	.	.	.	.	.	.	.	.	T	P	E	A	L	R	D	A	L	S	A	L	V	S	P	L	Q	.	.	.	.	.	A	H	A	Q	R	V	A	I	A	S	T	G	.	.	.	.
Query Conservation																																				.	.	.	.	.	.	.	.																		.	.	.	.	.													.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.																		.	.	.	.	.													.	.	.	.
Template Conservation
Template Sequence		Y	I	G	I	D	L	G	T	S	G	V	K	V	I	L	L	N	E	Q	G	E	V	V	A	A	Q	T	E	K	L	T	V	S	R	P	H	P	L	W	S	E	Q	D	P	E	Q	W	W	Q	A	T	D	R	A	M	K	A	L	G	D	Q	H	S	L	Q	D	V	K	A	L	G	I	A	G	Q	M	H	G	A	T
Template Known Secondary structure									S	S									T	T	S													B			S	T	T																								S			T	T										S	S		B
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	R	D	G	S	L	L	A	L	N	P	H	N	L	G	G	L	L	H	F	P	L	V	K	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	D	A	Q	Q	R	V	L	R	P	A	I	L	W	N	D	G	R	C	A	Q	E	C	T	L	L	E	A	R	V	P	Q	S	R	V	I	T	G	N	L	M	M	P	G	F	T	A	P	K	L	L	W	V	Q	R	H	E	P	E	I	F	R	Q	I	D	K	V	L	L	P	K	D	Y	L	R	L	R	M	T
Template Known Secondary structure					T	T	S		B		S					T	T			T	T												T	T							S				T	T	S																		T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
																																																									93	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	L	T	N	L	P	.	.	.	.	T	I	A	I	N	D	A	Q	A	A	A	W	A	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation
Template Sequence		G	E	F	A	S	D	M	S	D	A	A	G	T	M	W	L	D	V	A	K	R	D	W	S	D	V	M	L	Q	A	C	D	L	S	R	D	Q	M	P	A	L	Y	E	G	S	E	I	T	G	A	L	L	P	E	V	A	K	A	W	G	M	A	T	V	P	V	V	A	G	G	G	D	N	A	A	G	A	V	G	V
Template Known Secondary structure		S											T	T	T				T	T	T	T										T	T			G	G	G	S						T	T	S													T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	A	L	D	G	D	I	T	D	M	V	F	I	T	V	S	T	G	V	G	G	G	V	V	S	G	C	K	L	L	T	G	P	G	G	L	A	G	H	I	G	H	T	L	A	D	P	H	G	P	V	C	G	C	G	R	T	G	C	V	E	A	I	A	S	G	R	G	I	A	A	A	A	Q	G	E	L	A	G
Query Conservation
Alig confidence									.	.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		G	M	V	D	A	N	Q	.	.	.	.	A	M	L	S	L	G	T	S	G	V	Y	F	A	V	S	E	G	F	L	S	K	P	E	S	A	V	H	S	F	C	H	A	L	P	.	.	.	.	.	.	.	.	.	.	Q	R	W	H	L	M	S	V	M	L	S	A	A	S	C	L	D	W	A	A	K	L	T	G	L
Template Known Secondary structure		T			S	T	T		.	.	.	.						S	S	S								S	S					T	T	T	T							S	S	T	.	.	.	.	.	.	.	.	.	.	T											T	T	T									T	T
Template Predicted Secondary structure									.	.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.											.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210																											.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.						.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Query Sequence		A	D	A	K	T	I	F	T	R	A	G	Q	G	D	E	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Q	L	I	H	R	S	A	R	T	L	A	R	L	I	A	D	I	K	A	T	T	.	.	.	.	.	D	C	Q	C	V	V	V	G	G	S
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Conservation
Template Sequence		S	N	V	P	A	L	I	A	A	A	Q	Q	A	D	E	S	A	E	P	V	W	F	L	P	Y	L	S	P	Q	A	K	G	V	F	F	G	L	T	H	Q	H	G	P	N	E	L	A	R	A	V	L	E	G	V	G	Y	A	L	A	D	G	M	D	V	V	H	A	C	G	I	K	P	Q	S	V	T	L	I	G	G
Template Known Secondary structure			S									T	T			T	T	S																						T	T																											T	T	T				S						S	G
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	L	A	E	G	Y	L	A	L	V	E	T	Y	L	A	Q	E	P	A	A	F	H	V	D	L	L	A	A	H	Y	R	H	D	A	G	L	L	G	A	A	L	L	A	Q
Query Conservation
Alig confidence																				.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.
Template Sequence		G	A	R	S	E	Y	W	R	Q	M	L	A	D	I	S	G	Q	Q	.	.	.	.	.	.	.	L	D	Y	R	T	G	G	D	V	G	P	A	L	G	A	A	R	L	A	Q
Template Known Secondary structure		G	G																	.	.	.	.	.	.	.					S		T	T	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.								.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions