Return to main results Retrieve Phyre Job Id

Job DescriptionP45425
Confidence96.85%DateThu Jan 5 12:02:38 GMT 2012
Rank108Aligned Residues262
% Identity18%Templatec2khoA_
PDB info PDB header:chaperoneChain: A: PDB Molecule:heat shock protein 70; PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10......... 20.........30......
Predicted Secondary structure 



.........








.....................................
Query SS confidence 
















. . . . . . . . .
















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  TLAIDIGGTKLAAALIG. . . . . . . . . ADGQIRDRRELPTPASQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation 




 


     
 
.........  
 

           .....................................
Alig confidence 
















.........
















.....................................
Template Conservation 




 


   

        

 
    
  

 
          
  
       
       
  

         
Template Sequence  IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQ
Template Known Secondary structure 


SSTT


TTS
SS

TTS
STTTTT
GGG
GGGTTT
BSSSTT
Template Predicted Secondary structure 



























Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   37..40.........50.........60.........70.........80.........
Predicted Secondary structure  ...........................






















Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . .




















































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . TPEALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNLGGLLHFPLV
Query Conservation  ...........................        
   
         
 
   
                        
Alig confidence  ...........................

























........


















Template Conservation                                

 
  
  
             ........  




       
  
 
Template Sequence  RDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVT. . . . . . . . EAVITVPAYFNDAQRQATK
Template Known Secondary structure 
SS

TTSBTT

S


........
TT

Template Predicted Secondary structure 
















........




Template SS confidence 















































































   84.....90.........100.........110.........120.........130...... ...140.........150.....
 
   90.........100.........110.........120.........130.........140.........150.........160.........
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  KTLEQLTNLPTIAINDAQAAAWAEFQALDGDITDMVFITVSTGVGGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCGCG
Query Conservation            
 
 

  
   

                  
 
           
  
 
   
             
Alig confidence 

























































.......














Template Conservation   

  

     

 

 


             


 
 
 

 



         .......             

Template Sequence  DAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGE. . . . . . . KTFEVLATNGDTHLG
Template Known Secondary structure  TTT
TTTTSSSS
SS

TTTS.......
SS
S
Template Predicted Secondary structure 
























.......







Template SS confidence 















































































   156...160.........170.........180.........190.........200.........210... ......220........
 
   170.........180.........190.........200.........210...
Predicted Secondary structure 













....................................
Query SS confidence 











































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  RTGCVEAIASGRGIAAAAQGELAGADAKTIFTRAGQGDEQAQQL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation       
   
   
               
      

  
  
....................................
Alig confidence 











































....................................
Template Conservation 
  

  
                         
   

  
  

        
                


   
  
Template Sequence  GEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESL
Template Known Secondary structure  GGGTS

STT
TTSSSTTTT
Template Predicted Secondary structure 

























Template SS confidence 















































































   229230.........240.........250.........260.........270.........280.........290.........300........
 
   214.....220........ .230.........240.........250.........260.........270.........280......
Predicted Secondary structure  .....
















Query SS confidence  . . . .














.

























































Query Sequence  . . . . IHRSARTLARLIADI. KATTDCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLA
Query Conservation  ....       

  
  
.   
 
  


 
 
             
          
            


 

Alig confidence  ....














.































.......


















Template Conservation         
   
   
  
      
  
 



 



 
   
   
   .......
      




 


  
Template Sequence  VEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE. . . . . . . PRKDVNPDEAVAIGAAVQG
Template Known Secondary structure 

STTGGGTSTTT

TTT
SSGGGGSSS
.......
B
SS
TTT
Template Predicted Secondary structure 













.......





Template SS confidence 













































































   309310.........320.........330.........340.........350.........360 .........370.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions