Job Description P45425 Confidence 88.76% Date Thu Jan 5 12:02:38 GMT 2012 Rank 149 Aligned Residues 253 % Identity 15% Template c1mwmA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																																			.	.	.	.	40	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	T	L	A	I	D	I	G	G	T	K	L	A	A	A	L	I	G	A	D	G	Q	I	R	D	R	R	E	L	P	T	P	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	P	E	A	L	R	D	A	L	S
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		M	L	.	V	F	I	D	D	G	S	T	N	I	K	L	Q	W	Q	E	S	D	G	T	I	K	Q	H	I	S	P	N	S	F	K	R	E	W	A	V	S	F	G	D	K	K	V	F	N	Y	T	L	N	G	E	Q	Y	S	F	D	P	I	S	P	D	T	N	I	A	W	Q	Y	S	D	V	N	V	V	A	V	H
Template Known Secondary structure				.							S	S									T	T	S													S	S					S	S	S	S							S	S	S														T	G	G	G	G	S
Template Predicted Secondary structure				.
Template SS confidence
		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.													.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	V	S	P	L	Q	A	H	A	Q	R	V	A	I	A	S	T	G	I	I	R	D	G	S	L	L	A	L	N	P	H	N	L	G	G	L	L	H	F	P	L	V	K	T	L	E	Q	L	T	N	L	.	.	.	.	.	.	.	.	.	.	.	.	P	T	I	A	I	N	D	A	Q	A	A	A	W	A	E	F
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.
Template Sequence		H	A	L	L	T	S	G	L	P	V	S	E	V	D	I	V	C	T	L	P	L	T	E	.	.	.	.	.	.	Y	Y	D	R	N	N	Q	P	N	T	E	N	I	E	R	K	K	A	N	F	R	K	K	I	T	L	N	G	G	D	T	F	T	I	K	D	V	K	V	M	P	E	S	I	P	A	G	Y	E	V	L
Template Known Secondary structure						T	S	S			S														.	.	.	.	.	.		B		T	T	S		B												T	T	S					T	T	B													S
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.							.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	L	D	G	D	I	T	D	M	V	F	I	T	V	S	T	G	V	G	G	G	V	V	S	G	C	K	L	L	T	G	P	G	G	L	A	G	H	I	G	H	T	L	A	D	P	H	G	P	V	C	G	C	G	R	T	G	C	V	E	A	I	A	S	G	R	G	I	A	A	A	A	Q	G	E	L	A	G	A
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	E	L	D	E	L	D	S	L	L	I	I	D	L	G	G	T	T	L	D	I	S	Q	V	M	G	K	L	S	G	I	S	K	I	Y	G	D	S	S	L	G	V	S	L	V	T	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	D	A	L	S	L	A	R	T	K	G
Template Known Secondary structure		T	T	S		T	T										S	S									G	G	G										T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T			T	T	G	G
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.																					.	.	.	.	210	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.																.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		D	A	K	T	I	F	T	R	A	G	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	Q	A	Q	Q	L	I	H	R	S	A	R	T	L	A	R	L	I	A	D	I	K	A	T	T	.	D	C	Q	C	V	V	V	G	G	S	V	G	L	A	E	G	Y	L	A	L	V	E	T	Y	L	A
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.													.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.
Template Sequence		S	S	Y	L	A	D	D	I	I	I	H	R	K	D	N	N	Y	L	K	Q	R	I	N	D	E	N	K	I	S	I	V	T	E	A	M	N	E	A	L	R	K	L	E	Q	R	V	L	N	T	L	N	E	F	S	G	Y	T	H	V	M	V	I	G	G	G	A	.	.	.	.	.	.	E	L	I	C	D	A	V	K
Template Known Secondary structure		G										T	T	T										S		S																										T	T			S								S	T	T		.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.							.	.	.	.	.	.	290	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	P	A	A	F	H	V	D	L	L	A	A	H	Y	R	H	D	A	G	L	L	G	A	A	L	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	H	T	Q	I	R	D	E	R	F	F	K	T	N	N	S	Q	Y	D	L	V	N	G	M	Y	L	I	G
Template Known Secondary structure					T			G	G	G					S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions