Job Description P0AAC0 Confidence 23.41% Date Thu Jan 5 11:12:30 GMT 2012 Rank 116 Aligned Residues 121 % Identity 17% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	V	V	I	D	P	N	Q	D	D	Q	P	A	L	R	R	A	V	Y	L	H	Q	R	I	G	G	K	I	K	A	F	L	P	I	Y	D	F	S	Y	E	M	T	T	L	L	S	P	D	E	R	T	A	M	R	Q	G	V	I	S	Q	R	T	A	W	I	H	E	Q	A	K	Y	Y	L	N	A	G	V	P	I
Query Conservation
Alig confidence																										.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	.	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I
Template Known Secondary structure							S	S	S	S	T	T														.										S				T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	S	S							S	S
Template Predicted Secondary structure																										.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																									.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		E	I	K	V	V	W	H	N	R	P	F	E	A	I	I	Q	E	V	I	S	G	G	.	H	D	L	V	L	K	M	A	H	Q	H	D	R	L	E	A	V	I	F	T	P	T	D	W	H	L	L	R	K	C	P	S	P	V	W	M	V	K	D	Q	P	W	P	E
Query Conservation																								.
Alig confidence																								.
Template Conservation
Template Sequence		Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q
Template Known Secondary structure					S	S	S			S	S	S	T	T							T	T	S	S		S									S		S	S											T	T	S	S	S			S								G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions