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Job DescriptionP63389
Confidence100.00%DateThu Jan 5 12:08:08 GMT 2012
Rank4Aligned Residues493
% Identity19%Templatec3ozxA_
PDB info PDB header:hydrolase, translationChain: A: PDB Molecule:rnase l inhibitor; PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain)
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20... ......30.........40.........50.........60.........70.........80...
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Query Sequence  SSLQIRRGVRVLLDNATAT. INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGSWQLAWVNQETPALPQAALEY
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Template Sequence  GEVIHRYKVNG. FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP. . . . NSKVGKDEVLKRFRGKEIYNY
Template Known Secondary structure 

SSTTS.






TT

TTSSTTSS


TT
T....TS


TTSTT
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   77..80....... ..90.........100.........110.........120.........130 .........140.........150.
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  VIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQA
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Template Sequence  FKELYSNELKIVHKIQYVEYASKFLK. GTVNEILTKIDERG. . . KKDEVKELLNM. TNLWNKDANILSGGGLQRLLVAAS
Template Known Secondary structure  TT



S
TTGGGTT

.SB

SS...
TT
.GGGTTSBGGG

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   152.......160.........170....... ..180.........190. ........200.. .......210.........220......
 
   164.....170.........180.........190..... ....200.........210.........220.........230.........240.
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Query Sequence  LICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY. . QGTLILISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSFEVQRATR
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Template Sequence  LLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESS. VYGRVSKS. . . . . . . .
Template Known Secondary structure  S

SSTTTT


TTS
S

STT.T


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   227..230.........240.........250.........260.........270.........280......... 290.......
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  LAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFRFSFRAPESLPNPLLKMEKVSAG
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YAARVGINNFLKGYLPAENMKIRPDEIKFMLKLKTKMKWTKIIKK
Template Known Secondary structure  ...................................TTTTT
SSS



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   298.300.........310.........320.........330.........340..
 
   322.......330.........340.........350.........360.........370.........380.........390.........400.
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Query Sequence  YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEYLRADESPIQHLARL
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Template Sequence  LGDFQLVVD. NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQI. LSYKPQR. . IFPNYDGTVQQYLENA
Template Known Secondary structure  TT
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TT


TTSSTTSS

SB

SS


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   353......360. ........370.........380.........390.........400..... ....410.. .......420........
 
   402... ....410.........420.........430.........440.........450.........460.........470......
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Query Sequence  APQE. . . LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIEF. .
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Template Sequence  SKDALSTSSWFFEEVTKRLNLH. RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR
Template Known Secondary structure 
SSTT
TTSTTTTTTGG.G
TTSBGGG

S

SSTTTT

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   429430.........440.........450 .........460.........470.........480.........490.........500.......
 
   477..480.........490.........500.........510.........520.........530.........540.........550....
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Query Sequence  . . EGALVVVSHDRHLLRSTTDDLYLVHDRKVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENANSAQARKDQKRREAELR
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Template Sequence  ERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQK
Template Known Secondary structure  TT

S

STTT


T

TTT


TTS
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   508.510.........520.........530.........540.........550.........560.........570.........580.......
 
   555.
Predicted Secondary structure 
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Query Sequence  AQ
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Template Sequence  ER
Template Known Secondary structure 
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Template SS confidence 

   588.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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