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Job DescriptionP63389
Confidence100.00%DateThu Jan 5 12:08:08 GMT 2012
Rank44Aligned Residues204
% Identity26%Templatec3gd7C_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:fusion complex of cystic fibrosis transmembrane PDBTitle: crystal structure of human nbd2 complexed with n6-2 phenylethyl-atp (p-atp)
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   308.310.........320.. .......330.........340.........350.........360.........370. ....
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Query Sequence  LPNPLLKMEKVSAGY. . GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL. AKGI. . . . . . . . .
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Template Sequence  PSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL. NTEGEIQIDGVSWDSITLEQWR
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S

SSTTS

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   1205....1210.........1220.........1230.........1240.........1250.........1260. ........1270.........1280...
 
   376...380.........390.........400.........410.........420.. .......430.........440....
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Query Sequence  . KLGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGGFGFQGD. . . . . . . . . . KVTEETRRFSGGEKARLVLALI
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Template Sequence  KAFGVIPQ. . . KVFIFSGTFRKNLD. PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS
Template Known Secondary structure  GGS
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SSB
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TTTGGGSTTGGG
B

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   1284.....1290. ........1300..... ....1310.........1320.........1330.........1340.........1350.........
 
   445....450.........460.........470........ .480.........490.........500.........510.......
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Query Sequence  VWQRPNLLLLDEPTNHLDLDMRQALTEALIEFEG. ALVVVSHDRHLLRSTTDDLYLVHDRKVEPFDGDLEDYQQ
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Template Sequence  VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQ. YDSILELYH
Template Known Secondary structure  TT

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TTTTS
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   1360.........1370.........1380.........1390.........1400.........1410.........1420... ......1430..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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