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Job DescriptionP63389
Confidence98.71%DateThu Jan 5 12:08:08 GMT 2012
Rank82Aligned Residues298
% Identity17%Templatec3cmvG_
PDB info PDB header:recombinationChain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
Resolution4.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.........70.........80.........90.........100
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Query Sequence  TATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGSWQLAWVNQETPALPQAALEYVIDGDREYRQLEAQLHD
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Template Sequence  AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR. . . . . . . . EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ
Template Known Secondary structure  SSSTTS
STTSST........TT


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   1053......1060.........1070.........1080..... ....1090.........1100.........1110.........1120....
 
   101........ 110.........120.........130.. .......140......
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Query Sequence  ANERNDGHA. . . . . . . . . . . . . . IATIHGKLDAIDAWSIRSRAASL. . . . . . . . . . . . . . . . . . . . LHGLGFSNEQLERP
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Template Sequence  ALEICDALARSGAVDVIVVDSVAALTPKAEIEGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRI
Template Known Secondary structure  TTSS


GGG





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   1125....1130.........1140.........1150.........1160.........1170.........1180.........1190.........1200....
 
   147..150.........160........ .170.........180.........190.........200.........210.........220....
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Query Sequence  VSDFSGGWRMRLNLAQALICRS. . DLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSM
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Template Sequence  GAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI. LYGEGINFYGELV. DLGVKEKLIEKAGAWYSY. KGEKIGQGKA. .
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   12291230.........1240.........1250.........1260.. .......1270..... ....1280.........1290... ......1300...
 
   225....230.........240.........250.........260.........270.........280.........290.........300....
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Query Sequence  FEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFRFSFRA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . NATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVE
Template Known Secondary structure  ......................TTS


SSTT

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   1304.....1310.........1320.........1330.........1340.........1350.........1360.
 
   305....310.........320.........330.... .....340.........350.........360.........370.
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Query Sequence  PESLPNPLLKMEKVSAGYGDRIILDSIKLN. . . . . LVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL
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Template Sequence  TISTGS. . . . . . . . . . . . . . . . . . LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF
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   20392040.... .....2050.........2060.........2070.........2080.........2090..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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