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Job DescriptionP63389
Confidence98.10%DateThu Jan 5 12:08:08 GMT 2012
Rank93Aligned Residues248
% Identity19%Templatec3cf1C_
PDB info PDB header:transport proteinChain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx
Resolution4.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.........70.........80.........90.........100
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Query Sequence  TATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGSWQLAWVNQETPALPQAALEYVIDGDREYRQLEAQLHD
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Template Sequence  AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   232.......240.........250.........260.........270.
 
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Query Sequence  ANERNDGHAIATIHGKLDAIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP. . . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PEIMSKLAGE. . SESNLRKAFEEAEKNAPAIIFIDELDAIA
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   272.......280. ........290.........300.........310
 
   177..180.........190....... ..200.........210.. .......220.........230.........240
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Query Sequence  . . . TNHLDLDAVIWLEKWLKSYQG. . . . . . . TLILISHDRDFLDPI. . . . . . VDKIIHIEQQSMFEYTGNYSSFEVQRAT
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Template Sequence  PKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA. . . . . . . . . . . TGRLE
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   311........320.........330.........340.........350.........360.........370.... .....
 
   241..... ...250.........260.........270.........280.........290..
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Query Sequence  RLAQQQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . AMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPA
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Template Sequence  ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS
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   380.........390.........400.........410.........420.........430.........440.........450.........
 
   293......300.........310.........320.. .......330.........340.........350.........360..
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Query Sequence  HVDNPFRFSFRAPESLPNPLLKMEKVSAGY. . . . . . . . GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL
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Template Sequence  NPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKG. . VLFYGPPGCGKTLLAKAIANEC
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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