Job Description P63389 Confidence 100.00% Date Thu Jan 5 12:08:08 GMT 2012 Rank 48 Aligned Residues 236 % Identity 19% Template c3b5xB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae Resolution 5.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		Q	S	R	I	K	M	L	E	R	M	E	L	I	A	P	A	H	V	D	N	P	F	R	F	S	F	R	A	P	E	S	L	P	N	P	L	L	K	M	E	K	V	S	A	G	Y	.	.	G	D	R	I	I	L	D	S	I	K	L	N	L	V	P	G	S	R	I	G	L	L	G	R	N	G	A	G	K	S	T	L
Query Conservation																																																.	.
Alig confidence																																																.	.
Template Conservation
Template Sequence		S	E	F	Q	R	G	M	A	A	C	Q	T	L	F	G	L	M	D	L	E	T	E	R	D	N	G	K	Y	E	A	E	R	V	N	G	E	V	D	V	K	D	V	T	F	T	Y	Q	G	K	E	K	P	A	L	S	H	V	S	F	S	I	P	Q	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I
Template Known Secondary structure														T	T	T	T	S			S							S	S			S							B			S					S	S	T	T	S			S	S		S							S	S									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.												.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.																											.																				.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.																											.																				.	.
Query Sequence		I	K	L	L	A	G	E	L	A	P	V	S	G	E	I	G	L	A	K	G	I	.	.	.	.	.	.	.	.	.	.	.	K	L	G	Y	F	A	Q	H	Q	L	E	Y	L	R	A	D	E	S	P	I	Q	H	L	A	R	L	.	A	P	Q	E	L	E	Q	K	L	R	D	Y	L	G	G	F	G	F	Q	.	.
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.																											.																				.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.								.	.	.																	.																				.	.
Template Conservation																																									.	.	.
Template Sequence		A	N	L	F	T	R	F	Y	D	V	D	S	G	S	I	C	L	D	G	H	D	V	R	D	Y	K	L	T	N	L	R	R	H	F	A	L	V	S	Q	.	.	.	N	V	H	L	F	N	D	T	I	A	N	N	I	A	Y	A	A	E	G	E	Y	T	R	E	Q	I	E	Q	A	A	R	Q	A	H	A	M	E	F
Template Known Secondary structure				T	T	S			S	S					S				T	T			S	T	T	S		S	S	S	S	S	T	T						S	.	.	.	S					T	T								T	T	S	S	S	S			S		S	T	T						T	S	T	T	T	T
Template Predicted Secondary structure																																									.	.	.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.				.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
						421	.	.	.	.	.	.	.	.	430					.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.			.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure		.	.	.	.											.	.	.	.																																															.	.
Query SS confidence		.	.	.	.											.	.	.	.																																															.	.
Query Sequence		.	.	.	.	G	D	K	V	T	E	E	T	R	R	.	.	.	.	F	S	G	G	E	K	A	R	L	V	L	A	L	I	V	W	Q	R	P	N	L	L	L	L	D	E	P	T	N	H	L	D	L	D	M	R	Q	A	L	T	E	A	L	I	E	F	.	.	E	G	A	L	V	V	V	S	H	D	R	H	L	L
Query Conservation		.	.	.	.											.	.	.	.																																															.	.
Alig confidence		.	.	.	.											.	.	.	.																																															.	.
Template Conservation
Template Sequence		I	E	N	M	P	Q	G	L	D	T	V	I	G	E	N	G	T	S	L	S	G	G	Q	R	Q	R	V	A	I	A	R	A	L	L	R	D	A	P	V	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	N	K	T	V	L	V	I	A	H	R	L	S	T	I
Template Known Secondary structure		T	T	S	S	S	S		S	S					S	S		S	S	S		T	T												T				S	S						S		S	S			T	T	T										T	T	T	T	T	S							S		G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	T	T	D	D	L	Y	L	V	H	D	R	K	V	E	P	F	D	G	D	L	E	D	Y	Q	Q
Query Conservation
Alig confidence		.																	.
Template Conservation		.																	.
Template Sequence		.	E	Q	A	D	E	I	L	V	V	D	E	G	E	I	I	E	.	R	G	R	H	A	D	L	L	A
Template Known Secondary structure		.	G	T		S							S	S					.		S							S
Template Predicted Secondary structure		.																	.
Template SS confidence
			543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.		.	560	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions